JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LBHD2_chr14_103079210_103095027	0/0	t0007	406	3	2	1	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	t0008	406	2	2	0	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBHD2_chr14_103079210_103095027	0/0	t0009	406	1	1	0	0	0	0	copy fasta	LBHD2	chr14	103079210	103095027
LBH_chr2_30226534_30265028	1/1	t0001	2613	206	34	27	107	10	26	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0002	2619	39	4	7	27	1	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0003	2613	22	6	2	13	0	1	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0004	2613	22	1	15	0	3	3	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0005	2618	18	2	11	1	2	2	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0006	2619	9	8	1	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0007	2615	8	0	0	8	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0008	2614	6	0	0	6	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0009	2618	6	6	0	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0010	2620	6	6	0	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0011	2619	5	0	0	5	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0012	2613	4	3	1	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0013	2618	4	3	1	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0014	2613	3	0	0	0	0	3	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0015	2612	3	2	1	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0016	2620	3	3	0	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0017	2613	3	0	0	0	0	3	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0018	2613	3	0	0	3	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0019	2612	2	2	0	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0020	2612	2	2	0	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0021	2618	2	0	0	0	0	2	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0022	2619	2	0	0	2	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0023	2620	2	2	0	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0024	2613	2	2	0	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0025	2612	1	0	0	0	0	1	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0026	2613	1	0	0	1	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0027	2613	1	0	0	1	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0028	2574	1	0	0	0	0	1	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0029	2613	1	0	0	1	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0030	2613	1	0	0	1	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0031	2613	1	0	0	1	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0032	2654	1	0	0	1	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0033	2619	1	0	1	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0034	2619	1	1	0	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0035	2619	1	0	1	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0036	2619	1	1	0	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0037	2620	1	1	0	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBH_chr2_30226534_30265028	0/0	t0038	2613	1	1	0	0	0	0	copy fasta	LBH	chr2	30226534	30265028
LBP_chr20_38341482_38382013	1/1	t0001	380	329	73	45	161	9	39	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	t0002	380	55	19	25	3	3	5	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	t0003	380	4	3	0	1	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	t0004	380	3	0	0	3	0	0	copy fasta	LBP	chr20	38341482	38382013
LBP_chr20_38341482_38382013	0/0	t0005	380	3	1	2	0	0	0	copy fasta	LBP	chr20	38341482	38382013
LBR_chr1_225396502_225433038	1/0	t0001	1901	198	37	38	97	9	16	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/1	t0002	1901	53	41	7	0	0	4	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	t0003	1901	36	6	10	13	1	6	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	t0004	1901	25	2	9	10	0	4	copy fasta	LBR	chr1	225396502	225433038