JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LBR_chr1_225396502_225433038	0/0	t0005	1901	15	0	1	9	0	5	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	t0006	1901	2	2	0	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	t0007	1901	2	2	0	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	t0008	1901	1	0	0	1	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	t0009	1901	1	0	0	1	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	t0010	1901	1	0	1	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	t0011	1901	1	0	0	0	0	1	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	t0012	1901	1	1	0	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	t0013	1889	1	1	0	0	0	0	copy fasta	LBR	chr1	225396502	225433038
LBR_chr1_225396502_225433038	0/0	t0014	1901	1	0	0	1	0	0	copy fasta	LBR	chr1	225396502	225433038
LBX1_chr10_101221994_101234463	1/1	t0001	925	409	81	76	192	14	44	copy fasta	LBX1	chr10	101221994	101234463
LBX1_chr10_101221994_101234463	0/0	t0002	933	7	1	1	5	0	0	copy fasta	LBX1	chr10	101221994	101234463
LBX1_chr10_101221994_101234463	0/0	t0003	925	4	4	0	0	0	0	copy fasta	LBX1	chr10	101221994	101234463
LBX1_chr10_101221994_101234463	0/0	t0004	925	3	1	2	0	0	0	copy fasta	LBX1	chr10	101221994	101234463
LBX1_chr10_101221994_101234463	0/0	t0005	918	3	3	0	0	0	0	copy fasta	LBX1	chr10	101221994	101234463
LBX1_chr10_101221994_101234463	0/0	t0006	925	2	1	1	0	0	0	copy fasta	LBX1	chr10	101221994	101234463
LBX1_chr10_101221994_101234463	0/0	t0007	925	1	1	0	0	0	0	copy fasta	LBX1	chr10	101221994	101234463
LBX1_chr10_101221994_101234463	0/0	t0008	925	1	1	0	0	0	0	copy fasta	LBX1	chr10	101221994	101234463
LBX1_chr10_101221994_101234463	0/0	t0009	925	1	1	0	0	0	0	copy fasta	LBX1	chr10	101221994	101234463
LBX1_chr10_101221994_101234463	0/0	t0010	925	1	0	0	1	0	0	copy fasta	LBX1	chr10	101221994	101234463
LBX2_chr2_74492517_74504603	1/1	t0001	477	352	94	79	121	16	40	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	t0002	477	3	2	1	0	0	0	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	t0003	477	1	0	0	1	0	0	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	t0004	477	1	1	0	0	0	0	copy fasta	LBX2	chr2	74492517	74504603
LBX2_chr2_74492517_74504603	0/0	t0005	477	1	1	0	0	0	0	copy fasta	LBX2	chr2	74492517	74504603
LCA5L_chr21_39400728_39450778	0/0	t0001	521	162	25	36	80	7	14	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/1	t0002	521	75	49	14	5	3	3	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	t0003	521	57	3	7	35	4	8	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	1/0	t0004	521	41	6	9	20	0	5	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	t0005	521	2	2	0	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	t0006	521	1	1	0	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	t0007	521	1	1	0	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5L_chr21_39400728_39450778	0/0	t0008	521	1	1	0	0	0	0	copy fasta	LCA5L	chr21	39400728	39450778
LCA5_chr6_79479991_79542430	0/0	t0001	2471	181	28	29	107	2	15	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/1	t0002	2471	103	26	15	33	6	22	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	1/0	t0003	2471	29	7	7	5	4	5	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0004	2471	28	9	5	11	2	1	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0005	2471	21	0	3	17	0	1	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0006	2471	10	9	1	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0007	2471	8	8	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0008	2471	5	0	5	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0009	2470	3	3	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0010	2471	2	1	0	1	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0011	2471	2	2	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0012	2471	2	2	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0013	2471	2	0	0	2	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0014	2471	1	0	0	1	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0015	2471	1	1	0	0	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0016	2471	1	0	0	1	0	0	copy fasta	LCA5	chr6	79479991	79542430
LCA5_chr6_79479991_79542430	0/0	t0017	2471	1	0	1	0	0	0	copy fasta	LCA5	chr6	79479991	79542430