JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCE7A_chr1_152854996_152866252	0/0	t0005	325	1	0	0	1	0	0	copy fasta	LCE7A	chr1	152854996	152866252
LCK_chr1_32246265_32291165	1/1	t0001	562	245	62	50	76	15	40	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	t0002	562	21	18	3	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	t0003	562	4	0	3	0	1	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	t0004	562	2	0	2	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	t0005	562	1	1	0	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	t0006	562	1	1	0	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCLAT1_chr2_30442246_30649225	0/0	t0001	3760	100	2	23	66	1	8	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0002	3764	33	1	8	18	0	6	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	1/1	t0003	3749	28	0	6	13	0	7	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0004	3759	28	9	11	2	3	3	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0005	3761	25	2	1	16	2	4	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0006	3760	14	7	1	4	2	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0007	3764	10	10	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0008	3753	9	8	1	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0009	3765	7	0	2	3	0	2	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0010	3764	6	0	0	5	1	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0011	3760	6	0	0	6	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0012	3746	5	3	2	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0013	3761	4	0	1	2	0	1	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0014	3761	4	4	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0015	3764	3	0	3	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0016	3763	3	3	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0017	3757	3	3	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0018	3752	3	3	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0019	3756	3	3	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0020	3760	3	0	0	0	2	1	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0021	3762	3	3	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0022	3764	2	0	0	0	0	2	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0023	3769	2	1	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0024	3765	2	2	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0025	3761	2	0	0	2	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0026	3768	2	2	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0027	3748	2	0	0	0	0	2	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0028	3760	2	0	0	2	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0029	3765	2	0	2	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0030	3754	2	2	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0031	3761	2	2	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0032	3764	1	0	1	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0033	3769	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0034	3763	1	0	1	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0035	3764	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0036	3764	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0037	3764	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0038	3765	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0039	3764	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0040	3761	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0041	3761	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0042	3758	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0043	3764	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225