JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCLAT1_chr2_30442246_30649225	0/0	t0044	3751	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0045	3771	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0046	3776	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0047	3748	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0048	3761	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0049	3761	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0050	3758	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0051	3755	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0052	3760	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0053	3750	1	0	0	0	1	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0054	3760	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0055	3760	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0056	3760	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0057	3765	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0058	3760	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0059	3760	1	0	1	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0060	3766	1	0	0	0	0	1	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0061	3760	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0062	3761	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0063	3762	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0064	3762	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0065	3757	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0066	3762	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0067	3766	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0068	3761	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0069	3760	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0070	3760	1	1	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0071	3756	1	0	0	0	1	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0072	3758	1	0	1	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0073	3764	1	0	0	0	0	1	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0074	3764	1	0	0	0	0	1	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0075	3760	1	0	1	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0076	3761	1	0	0	0	0	1	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	t0077	3759	1	0	0	0	1	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCMT1_chr16_25106742_25183228	1/1	t0001	348	328	73	55	148	16	34	copy fasta	LCMT1	chr16	25106742	25183228
LCMT1_chr16_25106742_25183228	0/0	t0002	348	9	8	1	0	0	0	copy fasta	LCMT1	chr16	25106742	25183228
LCMT1_chr16_25106742_25183228	0/0	t0003	348	8	7	1	0	0	0	copy fasta	LCMT1	chr16	25106742	25183228
LCMT1_chr16_25106742_25183228	0/0	t0004	348	2	2	0	0	0	0	copy fasta	LCMT1	chr16	25106742	25183228
LCMT1_chr16_25106742_25183228	0/0	t0005	348	1	0	1	0	0	0	copy fasta	LCMT1	chr16	25106742	25183228
LCMT2_chr15_43318649_43335573	0/0	t0001	4854	93	20	8	56	2	7	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0002	4870	80	2	23	41	4	10	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/1	t0003	4871	39	0	12	22	1	3	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0004	4870	24	0	3	16	1	4	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0005	4855	24	1	2	21	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0006	4854	18	2	0	16	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0007	4850	11	11	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0008	4871	10	0	1	7	2	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0009	4872	9	0	4	2	1	2	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0010	4854	8	8	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0011	4871	5	2	1	0	0	2	copy fasta	LCMT2	chr15	43318649	43335573