JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCMT2_chr15_43318649_43335573	0/0	t0012	4870	5	2	1	0	0	2	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0013	4872	4	1	0	2	0	1	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0014	4872	4	3	1	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0015	4858	3	0	0	3	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0016	4859	3	3	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0017	4855	3	3	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0018	4854	3	3	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0019	4864	3	0	1	0	0	2	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0020	4871	3	0	2	0	1	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0021	4870	3	0	0	0	3	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0022	4867	2	0	0	0	0	2	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0023	4871	2	0	0	2	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0024	4867	2	1	1	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0025	4866	2	0	1	0	1	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0026	4871	2	0	0	2	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0027	4855	2	2	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0028	4854	2	2	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0029	4854	2	2	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0030	4855	2	1	1	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0031	4855	2	2	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0032	4874	2	1	0	0	0	1	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0033	4866	2	0	0	0	0	2	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0034	4865	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0035	4871	1	0	0	0	0	1	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0036	4872	1	0	1	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0037	4872	1	0	1	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0038	4871	1	0	0	0	0	1	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0039	4871	1	0	0	1	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0040	4871	1	0	0	1	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0041	4870	1	0	1	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	1/0	t0042	4865	1	0	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0043	4870	1	0	0	0	0	1	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0044	4854	1	0	1	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0045	4851	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0046	4854	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0047	4857	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0048	4759	1	0	0	0	0	1	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0049	4851	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0050	4855	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0051	4854	1	0	0	1	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0052	4854	1	0	0	1	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0053	4854	1	0	1	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0054	4855	1	0	0	1	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0055	4870	1	0	1	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0056	4871	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0057	4870	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0058	4864	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0059	4853	1	0	0	0	0	1	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0060	4872	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0061	4871	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573