JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCMT2_chr15_43318649_43335573	0/0	t0062	4865	1	0	0	0	0	1	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0063	4854	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	t0064	4854	1	0	0	1	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCN10_chr9_136733170_136747940	1/1	t0001	1393	279	65	64	94	12	42	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0002	1393	46	9	16	18	1	2	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0003	1393	34	5	1	25	2	1	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0004	1393	8	8	0	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0005	1393	7	6	1	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0006	1393	2	0	0	2	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0007	1393	2	0	0	0	1	1	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0008	1393	1	0	0	1	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0009	1393	1	0	0	1	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0010	1393	1	1	0	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0011	1393	1	1	0	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0012	1393	1	1	0	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0013	1393	1	1	0	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0014	1393	1	0	0	1	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0015	1393	1	0	0	1	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0016	1393	1	0	0	1	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0017	1393	1	0	0	0	0	1	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0018	1393	1	0	0	1	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0019	1393	1	0	0	1	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0020	1393	1	0	0	0	0	1	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	t0021	1393	1	1	0	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN12_chr9_136947273_136960497	1/1	t0001	154	382	88	78	150	16	48	copy fasta	LCN12	chr9	136947273	136960497
LCN15_chr9_136754634_136769518	1/1	t0001	213	346	84	68	128	18	46	copy fasta	LCN15	chr9	136754634	136769518
LCN15_chr9_136754634_136769518	0/0	t0002	213	8	8	0	0	0	0	copy fasta	LCN15	chr9	136754634	136769518
LCN15_chr9_136754634_136769518	0/0	t0003	213	1	1	0	0	0	0	copy fasta	LCN15	chr9	136754634	136769518
LCN15_chr9_136754634_136769518	0/0	t0004	213	1	1	0	0	0	0	copy fasta	LCN15	chr9	136754634	136769518
LCN1_chr9_135516440_135531540	1/1	t0001	256	432	95	83	190	16	46	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	t0002	256	1	0	0	1	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	t0003	256	1	1	0	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	t0004	256	1	0	0	1	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	t0005	256	1	0	1	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN2_chr9_128144453_128158453	1/1	t0001	224	371	62	66	185	18	38	copy fasta	LCN2	chr9	128144453	128158453
LCN2_chr9_128144453_128158453	0/0	t0002	224	35	30	2	0	0	3	copy fasta	LCN2	chr9	128144453	128158453
LCN2_chr9_128144453_128158453	0/0	t0003	224	4	4	0	0	0	0	copy fasta	LCN2	chr9	128144453	128158453
LCN2_chr9_128144453_128158453	0/0	t0004	224	1	0	0	1	0	0	copy fasta	LCN2	chr9	128144453	128158453
LCN2_chr9_128144453_128158453	0/0	t0005	224	1	0	0	0	0	1	copy fasta	LCN2	chr9	128144453	128158453
LCN6_chr9_136739017_136753525	1/1	t0001	217	195	61	51	47	6	28	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	t0002	217	186	26	29	103	9	19	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	t0003	217	11	11	0	0	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	t0004	217	1	0	0	0	1	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	t0005	217	1	0	0	1	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	t0006	217	1	0	0	0	0	1	copy fasta	LCN6	chr9	136739017	136753525
LCN6_chr9_136739017_136753525	0/0	t0007	217	1	0	0	1	0	0	copy fasta	LCN6	chr9	136739017	136753525
LCN8_chr9_136749386_136763243	0/0	t0001	426	195	29	39	89	14	24	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	1/1	t0002	426	123	54	15	31	3	18	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	t0003	426	42	8	14	17	1	2	copy fasta	LCN8	chr9	136749386	136763243
LCN8_chr9_136749386_136763243	0/0	t0004	426	3	3	0	0	0	0	copy fasta	LCN8	chr9	136749386	136763243