Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APBA2_chr15_28880974_29123315	0/0	t0040	1703	1	0	1	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0041	1700	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0042	1696	1	0	0	1	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0043	1695	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0044	1692	1	0	0	1	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA2_chr15_28880974_29123315	0/0	t0045	1704	1	1	0	0	0	0	copy fasta	APBA2	chr15	28880974	29123315
APBA3_chr19_3745772_3766692	0/0	t0001	449	209	28	31	126	8	16	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	1/1	t0002	449	159	61	32	41	4	19	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0003	449	50	3	14	20	4	9	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0004	449	13	0	1	7	2	3	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0005	449	4	0	0	4	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0006	449	3	0	0	3	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0007	449	2	0	2	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0008	449	2	0	0	2	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0009	449	2	2	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0010	449	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0011	449	1	0	0	0	0	1	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0012	449	1	0	1	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0013	449	1	0	1	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0014	449	1	0	0	1	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBA3_chr19_3745772_3766692	0/0	t0015	449	1	1	0	0	0	0	copy fasta	APBA3	chr19	3745772	3766692
APBB1IP_chr10_26433341_26572803	0/1	t0001	633	243	39	38	133	5	27	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	1/0	t0002	633	104	47	26	21	3	6	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	t0003	633	5	3	2	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	t0004	633	2	2	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	t0005	633	1	0	0	0	0	1	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	t0006	633	1	1	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	t0007	633	1	1	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1IP_chr10_26433341_26572803	0/0	t0008	633	1	1	0	0	0	0	copy fasta	APBB1IP	chr10	26433341	26572803
APBB1_chr11_6390125_6424094	1/1	t0001	534	414	95	86	163	18	50	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	t0002	534	1	0	0	1	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB1_chr11_6390125_6424094	0/0	t0003	534	1	1	0	0	0	0	copy fasta	APBB1	chr11	6390125	6424094
APBB2_chr4_40805027_41219542	0/1	t0001	6625	44	13	10	17	0	3	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	1/0	t0002	6620	18	2	3	11	0	1	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0003	6627	14	4	4	2	2	2	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0004	6630	14	1	6	1	3	3	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0005	6630	7	7	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0006	6628	7	6	1	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0007	6631	6	1	3	0	2	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0008	6630	5	4	1	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0009	6631	4	4	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0010	6627	3	0	1	1	1	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0011	6619	3	2	0	1	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0012	6620	3	0	0	2	0	1	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0013	6630	3	0	3	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0014	6626	3	2	1	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0015	6633	3	0	3	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0016	6619	3	3	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0017	6621	3	0	0	1	0	2	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0018	6630	2	0	2	0	0	0	copy fasta	APBB2	chr4	40805027	41219542