JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCOR_chr10_96827298_97000956	0/0	t0013	11344	4	0	0	3	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0014	11342	4	0	0	4	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0015	11341	3	3	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0016	11333	3	3	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0017	11333	3	3	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0018	11334	3	0	3	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0019	11344	3	0	0	3	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0020	11343	3	0	0	0	0	3	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0021	11347	2	2	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0022	11333	2	2	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0023	11336	2	0	2	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0024	11323	2	0	0	2	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0025	11324	2	0	0	1	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0026	11328	2	0	2	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0027	11328	2	1	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0028	11330	2	0	1	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0029	11329	2	0	0	2	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0030	11329	2	0	1	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0031	11327	2	1	0	0	1	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0032	11329	2	2	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0033	11343	2	0	0	2	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0034	11341	2	0	1	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0035	11343	2	0	1	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0036	11342	2	0	1	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0037	11342	2	0	1	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0038	11328	2	2	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0039	11344	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0040	11360	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0041	11328	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0042	11357	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0043	11347	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0044	11352	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0045	11344	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0046	11347	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0047	11348	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0048	11342	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0049	11340	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0050	11347	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0051	11335	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0052	11350	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0053	11345	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0054	11350	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0055	11342	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0056	11343	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0057	11344	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0058	11346	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0059	11347	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0060	11342	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0061	11342	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0062	11341	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956