JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCOR_chr10_96827298_97000956	0/0	t0063	11342	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0064	11327	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0065	11339	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0066	11337	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0067	11336	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0068	11338	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0069	11339	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0070	11337	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0071	11337	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0072	11338	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0073	11334	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0074	11338	1	0	0	0	1	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0075	11335	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0076	11333	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0077	11334	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0078	11327	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0079	11327	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0080	11352	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0081	11328	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0082	11328	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0083	11327	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0084	11326	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0085	11329	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0086	11328	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0087	11322	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0088	11324	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0089	11325	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0090	11325	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0091	11327	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0092	11324	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0093	11324	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0094	11325	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0095	11325	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0096	11324	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0097	11326	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0098	11329	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0099	11329	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0100	11328	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0101	11334	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0102	11327	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0103	11329	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0104	11328	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0105	11328	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0106	11342	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0107	11327	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0108	11326	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0109	11329	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0110	11328	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0111	11325	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0112	11329	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956