JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCOR_chr10_96827298_97000956	0/0	t0113	11328	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0114	11328	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0115	11328	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0116	11330	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0117	11328	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0118	11328	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0119	11328	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0120	11330	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0121	11328	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0122	11324	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0123	11346	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0124	11343	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0125	11346	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0126	11341	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0127	11342	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0128	11344	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0129	11342	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0130	11345	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0131	11343	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0132	11344	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0133	11344	1	0	0	0	0	1	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0134	11340	1	0	0	0	1	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0135	11343	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0136	11342	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0137	11343	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0138	11341	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0139	11341	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0140	11342	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0141	11351	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0142	11325	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0143	11328	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0144	11328	1	0	1	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0145	11344	1	0	0	1	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0146	11340	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCOR_chr10_96827298_97000956	0/0	t0147	11327	1	1	0	0	0	0	copy fasta	LCOR	chr10	96827298	97000956
LCP1_chr13_46120923_46187177	0/0	t0001	1760	137	16	32	71	4	14	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0002	1760	120	18	21	57	7	17	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0003	1760	34	21	4	9	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0004	1760	20	2	7	5	1	5	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	1/0	t0005	1760	15	1	8	4	1	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0006	1760	13	7	0	6	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0007	1760	6	6	0	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0008	1760	4	0	0	4	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0009	1760	4	4	0	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0010	1760	4	0	4	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0011	1760	3	3	0	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0012	1760	2	0	0	2	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0013	1760	2	2	0	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0014	1760	2	0	0	1	0	1	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0015	1760	2	0	0	1	0	1	copy fasta	LCP1	chr13	46120923	46187177