JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCP1_chr13_46120923_46187177	0/0	t0016	1760	2	2	0	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0017	1760	1	0	1	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0018	1760	1	0	0	0	0	1	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0019	1760	1	0	0	0	0	1	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0020	1760	1	0	0	1	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0021	1760	1	0	0	1	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0022	1760	1	0	1	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0023	1760	1	1	0	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0024	1760	1	0	0	1	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0025	1760	1	0	0	0	1	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0026	1760	1	1	0	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/1	t0027	1760	1	0	0	0	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP1_chr13_46120923_46187177	0/0	t0028	1760	1	0	0	1	0	0	copy fasta	LCP1	chr13	46120923	46187177
LCP2_chr5_170241233_170302777	0/0	t0001	2631	120	37	25	40	6	12	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/1	t0002	2630	95	10	28	35	7	14	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	1/0	t0003	2631	51	4	12	27	2	5	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0004	2630	50	2	12	25	2	9	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0005	2630	12	5	0	7	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0006	2630	12	12	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0007	2630	10	7	0	3	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0008	2630	7	7	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0009	2631	4	0	0	4	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0010	2631	3	2	1	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0011	2631	2	0	0	2	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0012	2631	2	1	1	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0013	2631	2	2	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0014	2631	1	0	1	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0015	2631	1	0	0	1	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0016	2630	1	1	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0017	2630	1	0	0	0	1	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0018	2630	1	0	0	1	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0019	2630	1	0	0	0	0	1	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0020	2631	1	1	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0021	2631	1	1	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0022	2631	1	0	0	0	0	1	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0023	2631	1	1	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0024	2631	1	1	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0025	2630	1	1	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0026	2630	1	1	0	0	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCP2_chr5_170241233_170302777	0/0	t0027	2630	1	0	0	1	0	0	copy fasta	LCP2	chr5	170241233	170302777
LCTL_chr15_66542532_66570998	1/1	t0001	1123	382	57	74	194	13	42	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0002	1123	23	22	1	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0003	1124	9	2	2	0	3	2	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0004	1123	4	4	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0005	1123	3	3	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0006	1123	3	1	1	0	0	1	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0007	1123	2	2	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0008	1123	1	1	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0009	1123	1	1	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0010	1123	1	0	0	0	0	1	copy fasta	LCTL	chr15	66542532	66570998