JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LCTL_chr15_66542532_66570998	0/0	t0011	1123	1	1	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0012	1123	1	0	0	1	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0013	1123	1	1	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0014	1123	1	0	0	1	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCTL_chr15_66542532_66570998	0/0	t0015	1123	1	1	0	0	0	0	copy fasta	LCTL	chr15	66542532	66570998
LCT_chr2_135782850_135842184	0/1	t0001	490	256	55	46	125	4	25	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	t0002	488	76	18	17	31	2	8	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	1/0	t0003	490	15	6	1	5	0	2	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	t0004	490	8	4	1	0	0	3	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	t0005	490	6	0	3	2	0	1	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	t0006	490	3	3	0	0	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	t0007	490	1	0	0	1	0	0	copy fasta	LCT	chr2	135782850	135842184
LCT_chr2_135782850_135842184	0/0	t0008	490	1	0	0	0	0	1	copy fasta	LCT	chr2	135782850	135842184
LDAF1_chr16_21153674_21185616	0/1	t0001	1232	214	57	32	99	6	19	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0002	1233	79	29	9	36	2	3	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0003	1234	43	5	16	12	0	10	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	1/0	t0004	1232	24	2	9	0	6	6	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0005	1234	7	0	0	6	0	1	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0006	1235	7	0	1	4	0	2	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0007	1232	3	0	0	3	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0008	1233	3	3	0	0	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0009	1235	2	0	0	2	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0010	1232	1	0	0	1	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0011	1234	1	0	0	1	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0012	1232	1	0	1	0	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0013	1234	1	0	0	0	0	1	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0014	1243	1	1	0	0	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0015	1233	1	1	0	0	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0016	1232	1	0	0	1	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAF1_chr16_21153674_21185616	0/0	t0017	1232	1	0	0	1	0	0	copy fasta	LDAF1	chr16	21153674	21185616
LDAH_chr2_20679031_20828101	1/0	t0001	2940	85	33	15	25	3	8	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0002	2934	44	3	8	27	2	4	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0003	2940	40	13	10	7	2	8	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/1	t0004	2940	39	10	12	4	5	7	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0005	2940	30	9	6	11	2	2	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0006	2940	6	6	0	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0007	2940	3	1	2	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0008	2940	2	0	0	2	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0009	2940	2	2	0	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0010	2940	2	1	1	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0011	2934	1	0	0	1	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0012	2940	1	0	0	0	0	1	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0013	2940	1	1	0	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0014	2940	1	1	0	0	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDAH_chr2_20679031_20828101	0/0	t0015	2940	1	0	0	1	0	0	copy fasta	LDAH	chr2	20679031	20828101
LDB1_chr10_102101489_102125368	0/0	t0001	1860	65	11	11	36	1	6	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0002	1859	58	4	7	42	1	4	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	1/0	t0003	1863	26	1	9	5	4	6	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0004	1861	18	1	1	12	1	3	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0005	1858	17	5	1	7	1	3	copy fasta	LDB1	chr10	102101489	102125368