JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LDB1_chr10_102101489_102125368	0/0	t0006	1855	15	0	3	10	1	1	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0007	1864	15	0	5	6	0	4	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0008	1856	14	2	4	7	0	1	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/1	t0009	1865	12	1	2	3	0	5	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0010	1858	11	10	0	0	1	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0011	1863	7	0	5	2	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0012	1862	7	3	2	1	0	1	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0013	1857	6	1	0	5	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0014	1860	5	4	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0015	1844	5	0	0	5	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0016	1869	5	0	2	1	0	2	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0017	1859	5	4	0	0	0	1	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0018	1862	4	0	2	0	2	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0019	1848	4	0	2	2	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0020	1859	4	4	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0021	1865	3	0	3	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0022	1869	3	0	0	3	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0023	1858	3	2	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0024	1861	3	1	2	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0025	1838	3	0	3	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0026	1851	3	0	1	1	0	1	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0027	1857	3	3	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0028	1860	3	2	0	0	0	1	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0029	1860	3	2	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0030	1859	3	0	0	3	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0031	1864	2	0	1	1	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0032	1864	2	1	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0033	1869	2	2	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0034	1861	2	2	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0035	1847	2	1	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0036	1862	2	0	1	0	0	1	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0037	1860	2	0	0	2	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0038	1841	1	0	0	0	1	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0039	1842	1	0	0	1	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0040	1843	1	0	0	0	0	1	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0041	1856	1	0	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0042	1861	1	0	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0043	1862	1	0	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0044	1863	1	0	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0045	1841	1	1	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0046	1845	1	1	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0047	1856	1	1	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0048	1859	1	0	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0049	1856	1	1	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0050	1848	1	1	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0051	1863	1	1	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0052	1859	1	1	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0053	1863	1	1	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0054	1861	1	0	0	1	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0055	1862	1	0	0	1	0	0	copy fasta	LDB1	chr10	102101489	102125368