JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LDB1_chr10_102101489_102125368	0/0	t0056	1839	1	0	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0057	1840	1	0	0	0	0	1	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0058	1842	1	0	0	1	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0059	1843	1	0	0	1	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0060	1846	1	1	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0061	1850	1	0	0	1	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0062	1853	1	0	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0063	1850	1	0	1	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0064	1841	1	1	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0065	1861	1	1	0	0	0	0	copy fasta	LDB1	chr10	102101489	102125368
LDB1_chr10_102101489_102125368	0/0	t0066	1863	1	0	0	0	1	0	copy fasta	LDB1	chr10	102101489	102125368
LDB2_chr4_16496541_16903645	0/1	t0001	1263	100	50	11	22	2	14	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	1/0	t0002	1263	30	0	9	12	5	3	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	t0003	1263	24	7	10	4	1	2	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	t0004	1263	2	2	0	0	0	0	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	t0005	1263	1	0	1	0	0	0	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	t0006	1263	1	0	0	0	0	1	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	t0007	1263	1	0	0	1	0	0	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	t0008	1263	1	1	0	0	0	0	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	t0009	1263	1	0	1	0	0	0	copy fasta	LDB2	chr4	16496541	16903645
LDB2_chr4_16496541_16903645	0/0	t0010	1263	1	0	0	1	0	0	copy fasta	LDB2	chr4	16496541	16903645
LDB3_chr10_86663511_86705050	1/1	t0001	760	383	86	67	168	16	44	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	t0002	760	17	1	10	5	0	1	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	t0003	760	4	4	0	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	t0004	760	3	0	1	0	2	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	t0005	760	2	2	0	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	t0006	760	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	t0007	760	1	0	0	0	0	1	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86705050	0/0	t0008	760	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86705050
LDB3_chr10_86663511_86741072	0/0	t0001	3173	45	2	7	29	2	5	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0002	3179	39	5	9	14	4	7	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0003	3177	21	10	5	4	0	2	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0004	3175	21	9	3	6	0	3	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0005	3173	17	0	0	14	0	3	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0006	3181	13	5	5	2	1	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0007	3177	12	0	1	5	1	5	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0008	3173	11	8	1	2	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0009	3175	8	1	2	4	0	1	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0010	3180	8	8	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0011	3181	8	7	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0012	3173	6	0	2	4	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0013	3175	6	6	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0014	3173	5	1	4	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	1/0	t0015	3180	5	0	3	0	1	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0016	3180	5	2	0	2	0	1	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0017	3174	4	0	1	3	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0018	3174	4	4	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0019	3179	3	0	3	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0020	3178	3	1	0	0	0	2	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0021	3178	3	1	0	1	1	0	copy fasta	LDB3	chr10	86663511	86741072