JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LDB3_chr10_86663511_86741072	0/0	t0022	3177	2	0	1	0	0	1	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0023	3158	2	0	2	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0024	3179	2	1	0	0	1	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0025	3182	2	1	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0026	3182	2	0	2	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0027	3182	2	1	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0028	3179	2	0	0	2	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0029	3171	2	1	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0030	3169	2	1	0	0	0	1	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0031	3174	2	0	0	0	0	2	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0032	3171	2	0	2	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0033	3179	2	0	0	2	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0034	3173	2	2	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0035	3173	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0036	3171	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0037	3176	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0038	3180	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0039	3173	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0040	3173	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0041	3181	1	0	0	0	1	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/1	t0042	3171	1	0	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0043	3181	1	0	0	0	0	1	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0044	3179	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0045	3182	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0046	3159	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0047	3175	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0048	3177	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0049	3180	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0050	3173	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0051	3182	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0052	3176	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0053	3176	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0054	3174	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0055	3173	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0056	3173	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0057	3172	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0058	3172	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0059	3171	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0060	3169	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0061	3167	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0062	3181	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0063	3181	1	0	0	0	1	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0064	3179	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0065	3178	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0066	3181	1	0	0	0	0	1	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0067	3181	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0068	3179	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0069	3183	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0070	3176	1	0	0	0	1	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0071	3182	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072