Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APBB2_chr4_40805027_41219542	0/0	t0019	6624	2	0	1	0	0	1	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0020	6629	2	1	0	1	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0021	6631	2	0	0	2	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0022	6631	2	1	0	1	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0023	6618	2	2	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0024	6625	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0025	6632	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0026	6624	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0027	6625	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0028	6628	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0029	6630	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0030	6631	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0031	6628	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0032	6627	1	0	0	1	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0033	6618	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0034	6628	1	0	0	0	0	1	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0035	6627	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0036	6628	1	0	1	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0037	6632	1	0	1	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0038	6625	1	0	0	1	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0039	6625	1	0	0	1	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0040	6625	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0041	6625	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0042	6626	1	0	0	1	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0043	6625	1	0	0	0	0	1	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0044	6620	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0045	6630	1	0	0	1	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0046	6627	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0047	6631	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0048	6630	1	0	1	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0049	6627	1	0	0	1	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0050	6628	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0051	6632	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0052	6627	1	0	1	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0053	6628	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0054	6626	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0055	6629	1	0	1	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0056	6630	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0057	6625	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0058	6618	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0059	6625	1	0	0	0	0	1	copy fasta	APBB2	chr4	40805027	41219542
APBB2_chr4_40805027_41219542	0/0	t0060	6629	1	1	0	0	0	0	copy fasta	APBB2	chr4	40805027	41219542
APBB3_chr5_140553268_140569598	1/1	t0001	671	391	83	67	187	18	34	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	t0002	683	9	7	1	1	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	t0003	669	4	0	1	0	0	3	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	t0004	683	2	2	0	0	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	t0005	671	1	1	0	0	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	t0006	659	1	0	1	0	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	t0007	671	1	1	0	0	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	t0008	671	1	0	0	0	0	1	copy fasta	APBB3	chr5	140553268	140569598