JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LDB3_chr10_86663511_86741072	0/0	t0072	3181	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0073	3180	1	0	0	0	0	1	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0074	3177	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0075	3177	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0076	3175	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0077	3174	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0078	3175	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0079	3170	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0080	3165	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0081	3163	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0082	3182	1	0	1	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0083	3167	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0084	3172	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0085	3173	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0086	3180	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0087	3177	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0088	3175	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0089	3180	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0090	3182	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0091	3181	1	0	0	1	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0092	3171	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDB3_chr10_86663511_86741072	0/0	t0093	3180	1	1	0	0	0	0	copy fasta	LDB3	chr10	86663511	86741072
LDHAL6A_chr11_18450856_18484601	0/0	t0001	1541	117	17	30	49	7	14	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0002	1536	63	2	9	42	3	7	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0003	1538	45	0	6	34	0	5	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0004	1527	31	2	8	16	2	3	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0005	1543	26	3	5	18	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/1	t0006	1561	15	0	5	5	1	3	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0007	1545	15	13	2	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0008	1530	7	7	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0009	1538	6	0	0	6	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0010	1535	6	0	0	3	1	2	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0011	1540	6	1	3	1	1	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0012	1522	5	0	5	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0013	1561	3	3	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0014	1541	3	3	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0015	1525	3	3	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0016	1525	3	0	1	2	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0017	1575	2	2	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0018	1557	2	0	0	0	1	1	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0019	1559	2	2	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0020	1540	2	0	1	0	0	1	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0021	1528	2	1	1	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0022	1529	2	2	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0023	1529	2	2	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0024	1527	2	2	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0025	1527	2	2	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0026	1525	2	2	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0027	1609	1	0	0	1	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0028	1577	1	0	1	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601