JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LDHAL6A_chr11_18450856_18484601	0/0	t0029	1560	1	0	0	1	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0030	1558	1	0	0	1	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0031	1562	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0032	1559	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0033	1554	1	0	0	1	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0034	1562	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	1/0	t0035	1557	1	0	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0036	1562	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0037	1546	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0038	1545	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0039	1546	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0040	1548	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0041	1545	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0042	1544	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0043	1546	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0044	1539	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0045	1542	1	0	0	1	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0046	1540	1	0	0	1	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0047	1543	1	0	0	1	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0048	1541	1	0	1	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0049	1537	1	0	0	0	0	1	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0050	1540	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0051	1537	1	0	0	1	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0052	1542	1	0	1	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0053	1498	1	0	0	0	0	1	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0054	1540	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0055	1545	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0056	1543	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0057	1544	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0058	1536	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0059	1543	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0060	1544	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0061	1530	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0062	1524	1	0	0	1	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0063	1529	1	0	0	1	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0064	1529	1	0	1	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0065	1526	1	0	0	1	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0066	1524	1	0	0	1	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0067	1526	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0068	1529	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0069	1530	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0070	1530	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0071	1527	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6A_chr11_18450856_18484601	0/0	t0072	1528	1	1	0	0	0	0	copy fasta	LDHAL6A	chr11	18450856	18484601
LDHAL6B_chr15_59201843_59213588	1/1	t0001	601	352	47	72	177	14	40	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	t0002	601	34	11	6	14	1	2	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	t0003	601	30	4	6	13	3	4	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	t0004	601	17	17	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	t0005	601	4	4	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	t0006	601	2	2	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588