JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LDHAL6B_chr15_59201843_59213588	0/0	t0007	601	2	2	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	t0008	601	2	0	2	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	t0009	588	1	0	0	1	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	t0010	601	1	1	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	t0011	601	1	1	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	t0012	601	1	0	0	1	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHAL6B_chr15_59201843_59213588	0/0	t0013	601	1	1	0	0	0	0	copy fasta	LDHAL6B	chr15	59201843	59213588
LDHA_chr11_18389563_18413425	0/0	t0001	1243	161	18	42	72	6	23	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	1/0	t0002	1243	117	46	9	50	3	8	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	t0003	1243	55	16	10	24	2	3	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/1	t0004	1243	34	9	8	10	2	4	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	t0005	1243	8	0	0	7	0	1	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	t0006	1243	5	0	0	2	1	2	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	t0007	1243	2	2	0	0	0	0	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	t0008	1243	2	0	0	2	0	0	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	t0009	1243	2	2	0	0	0	0	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	t0010	1243	1	0	0	1	0	0	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	t0011	1243	1	0	1	0	0	0	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	t0012	1243	1	0	0	0	0	1	copy fasta	LDHA	chr11	18389563	18413425
LDHA_chr11_18389563_18413425	0/0	t0013	1243	1	1	0	0	0	0	copy fasta	LDHA	chr11	18389563	18413425
LDHB_chr12_21630342_21662842	1/1	t0001	299	314	81	67	110	14	40	copy fasta	LDHB	chr12	21630342	21662842
LDHB_chr12_21630342_21662842	0/0	t0002	299	10	10	0	0	0	0	copy fasta	LDHB	chr12	21630342	21662842
LDHB_chr12_21630342_21662842	0/0	t0003	299	1	0	1	0	0	0	copy fasta	LDHB	chr12	21630342	21662842
LDHB_chr12_21630342_21662842	0/0	t0004	299	1	1	0	0	0	0	copy fasta	LDHB	chr12	21630342	21662842
LDHC_chr11_18407318_18457063	0/0	t0001	1037	237	48	39	123	5	22	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/1	t0002	1040	59	35	8	8	2	5	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	t0003	1037	28	3	11	10	1	3	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	t0004	1037	12	0	1	11	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	t0005	1037	4	0	0	4	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	t0006	1040	2	2	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	t0007	1040	2	2	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	t0008	1037	1	1	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	1/0	t0009	1037	1	0	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	t0010	1037	1	0	1	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHC_chr11_18407318_18457063	0/0	t0011	1037	1	1	0	0	0	0	copy fasta	LDHC	chr11	18407318	18457063
LDHD_chr16_75106864_75121780	1/0	t0001	553	347	78	45	176	8	39	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/1	t0002	550	89	7	31	32	9	9	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	t0003	553	14	12	2	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	t0004	553	3	0	0	3	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	t0005	553	3	0	0	3	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	t0006	550	1	1	0	0	0	0	copy fasta	LDHD	chr16	75106864	75121780
LDHD_chr16_75106864_75121780	0/0	t0007	550	1	0	0	0	1	0	copy fasta	LDHD	chr16	75106864	75121780
LDLRAD1_chr1_54002298_54023186	1/1	t0001	1759	201	61	25	85	9	19	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0002	1759	152	6	32	94	6	14	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0003	1759	14	13	1	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0004	1759	5	5	0	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0005	1759	4	0	2	0	0	2	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0006	1757	4	4	0	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0007	1759	4	3	1	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0008	1759	2	0	1	0	0	1	copy fasta	LDLRAD1	chr1	54002298	54023186