JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LDLRAD1_chr1_54002298_54023186	0/0	t0009	1759	2	0	0	2	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0010	1759	2	0	2	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0011	1759	1	0	0	0	1	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0012	1759	1	0	1	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0013	1759	1	1	0	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0014	1759	1	1	0	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0015	1759	1	0	0	1	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0016	1759	1	1	0	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0017	1759	1	0	1	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0018	1759	1	0	0	1	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0019	1748	1	0	0	1	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD1_chr1_54002298_54023186	0/0	t0020	1759	1	1	0	0	0	0	copy fasta	LDLRAD1	chr1	54002298	54023186
LDLRAD2_chr1_21807265_21830225	0/0	t0001	3198	147	4	28	94	7	14	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	1/0	t0002	3198	90	23	17	32	2	15	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/1	t0003	3198	60	0	11	35	4	9	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0004	3198	23	20	2	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0005	3198	22	19	3	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0006	3198	20	0	10	10	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0007	3198	16	0	0	15	0	1	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0008	3198	10	5	2	0	0	3	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0009	3198	9	0	2	0	5	2	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0010	3198	5	5	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0011	3198	4	4	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0012	3198	4	0	0	4	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0013	3198	3	2	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0014	3198	2	2	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0015	3198	2	2	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0016	3198	2	0	0	2	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0017	3198	2	0	2	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0018	3198	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0019	3198	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0020	3198	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0021	3198	1	0	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0022	3198	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0023	3198	1	0	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0024	3198	1	0	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0025	3198	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0026	3198	1	0	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0027	3198	1	0	0	0	0	1	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0028	3198	1	0	0	0	0	1	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0029	3198	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0030	3198	1	0	0	0	0	1	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0031	3198	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0032	3198	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0033	3198	1	0	0	0	0	1	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0034	3198	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0035	3198	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0036	3198	1	0	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0037	3198	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0038	3198	1	0	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225