JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LDLRAD2_chr1_21807265_21830225	0/0	t0039	3198	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0040	3198	1	0	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0041	3198	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0042	3198	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0043	3198	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0044	3198	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0045	3198	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0046	3184	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0047	3198	1	0	0	1	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0048	3198	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0049	3198	1	1	0	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD2_chr1_21807265_21830225	0/0	t0050	3198	1	0	1	0	0	0	copy fasta	LDLRAD2	chr1	21807265	21830225
LDLRAD3_chr11_35939062_36237136	0/1	t0001	2777	112	22	22	44	3	20	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0002	2777	24	1	12	5	0	6	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0003	2777	23	0	6	15	1	1	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	1/0	t0004	2777	22	20	1	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0005	2777	8	8	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0006	2777	7	7	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0007	2777	7	6	1	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0008	2777	6	6	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0009	2783	4	4	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0010	2777	4	0	0	4	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0011	2777	3	0	0	3	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0012	2777	2	2	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0013	2777	2	0	0	0	2	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0014	2777	1	1	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0015	2777	1	1	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0016	2777	1	0	0	1	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0017	2777	1	0	1	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0018	2777	1	0	0	0	0	1	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0019	2777	1	0	0	0	0	1	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0020	2777	1	1	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0021	2777	1	1	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0022	2777	1	0	1	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0023	2776	1	1	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0024	2777	1	0	0	0	0	1	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD3_chr11_35939062_36237136	0/0	t0025	2777	1	1	0	0	0	0	copy fasta	LDLRAD3	chr11	35939062	36237136
LDLRAD4_chr18_13213760_13657751	0/0	t0001	7790	29	3	2	20	1	3	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0002	7793	25	11	4	6	2	2	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/1	t0003	7790	20	1	4	11	3	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0004	7790	7	4	2	0	0	1	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0005	7793	7	7	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0006	7790	4	4	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0007	7790	4	1	2	0	0	1	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0008	7794	3	3	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0009	7790	3	0	0	3	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0010	7793	3	3	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	1/0	t0011	7790	3	0	1	0	0	1	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0012	7794	3	2	1	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0013	7790	3	0	1	2	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751