JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LDLRAD4_chr18_13213760_13657751	0/0	t0014	7790	2	2	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0015	7790	2	2	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0016	7793	2	2	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0017	7790	2	1	0	0	1	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0018	7793	2	2	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0019	7788	2	2	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0020	7793	2	2	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0021	7790	2	1	0	1	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0022	7793	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0023	7790	1	0	0	0	0	1	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0024	7790	1	0	0	0	0	1	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0025	7790	1	0	1	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0026	7790	1	0	0	0	0	1	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0027	7793	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0028	7793	1	0	0	0	1	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0029	7790	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0030	7796	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0031	7793	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0032	7790	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0033	7793	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0034	7790	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0035	7790	1	0	0	1	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0036	7790	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0037	7790	1	0	1	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0038	7790	1	0	0	0	0	1	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0039	7793	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0040	7788	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0041	7790	1	0	1	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0042	7790	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0043	7796	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0044	7790	1	0	1	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0045	7790	1	0	0	0	1	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0046	7790	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0047	7790	1	0	0	1	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0048	7790	1	0	0	1	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0049	7790	1	0	0	1	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0050	7808	1	0	1	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0051	7793	1	0	1	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0052	7793	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0053	7788	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0054	7790	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0055	7793	1	0	0	0	1	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0056	7793	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0057	7790	1	0	0	1	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0058	7790	1	0	0	1	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0059	7790	1	0	1	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0060	7790	1	0	0	0	0	1	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0061	7790	1	0	0	0	0	1	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0062	7790	1	0	0	0	0	1	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0063	7790	1	0	0	0	0	1	copy fasta	LDLRAD4	chr18	13213760	13657751