JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LDLRAD4_chr18_13213760_13657751	0/0	t0064	7793	1	0	0	1	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0065	7790	1	0	0	1	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0066	7790	1	0	0	1	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0067	7790	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0068	7790	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAD4_chr18_13213760_13657751	0/0	t0069	7790	1	1	0	0	0	0	copy fasta	LDLRAD4	chr18	13213760	13657751
LDLRAP1_chr1_25538606_25573886	0/1	t0001	1989	147	34	31	62	7	12	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0002	1990	134	18	32	57	4	23	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0003	1990	15	14	0	0	1	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0004	1991	8	6	2	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0005	1990	6	0	0	6	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0006	1989	6	0	0	5	0	1	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0007	1990	5	5	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0008	1989	4	4	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0009	1989	3	2	0	1	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0010	1990	3	3	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0011	1989	3	0	0	0	0	3	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0012	1989	3	3	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0013	1989	2	0	0	0	0	2	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0014	1989	2	2	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	1/0	t0015	1988	2	1	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0016	1990	2	0	1	0	0	1	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0017	1991	2	2	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0018	1991	2	2	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0019	1990	2	0	0	2	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0020	1990	2	1	1	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0021	1990	1	0	0	1	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0022	1990	1	0	1	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0023	1989	1	0	0	1	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0024	1989	1	0	0	0	0	1	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0025	1989	1	0	0	0	0	1	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0026	1990	1	0	0	1	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0027	1990	1	0	1	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0028	1990	1	0	1	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0029	1990	1	1	0	0	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0030	1990	1	0	0	1	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLRAP1_chr1_25538606_25573886	0/0	t0031	1990	1	0	0	1	0	0	copy fasta	LDLRAP1	chr1	25538606	25573886
LDLR_chr19_11084463_11138820	0/1	t0001	2590	63	4	18	26	3	11	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	1/0	t0002	2591	35	17	5	6	4	2	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0003	2589	32	8	0	22	0	2	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0004	2590	26	9	0	14	0	3	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0005	2593	25	2	8	11	0	4	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0006	2590	25	9	6	8	0	2	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0007	2593	24	0	1	22	0	1	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0008	2589	21	6	10	1	2	2	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0009	2589	13	11	2	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0010	2593	9	0	2	3	1	3	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0011	2594	6	0	2	2	0	2	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0012	2594	5	0	0	5	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0013	2595	5	4	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820