JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LDLR_chr19_11084463_11138820	0/0	t0014	2593	4	0	0	3	0	1	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0015	2591	4	0	0	3	0	1	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0016	2593	3	0	0	3	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0017	2590	3	0	3	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0018	2591	3	0	0	3	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0019	2589	3	3	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0020	2589	3	3	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0021	2589	3	3	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0022	2594	2	0	0	2	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0023	2596	2	1	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0024	2592	2	2	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0025	2589	2	2	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0026	2595	2	0	0	2	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0027	2594	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0028	2590	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0029	2596	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0030	2594	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0031	2593	1	0	0	0	0	1	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0032	2595	1	0	1	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0033	2589	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0034	2593	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0035	2593	1	1	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0036	2589	1	1	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0037	2593	1	1	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0038	2590	1	1	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0039	2590	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0040	2590	1	0	0	0	0	1	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0041	2591	1	0	0	0	0	1	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0042	2590	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0043	2592	1	0	0	0	0	1	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0044	2590	1	0	1	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0045	2590	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0046	2589	1	1	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0047	2590	1	0	0	0	0	1	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0048	2589	1	1	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0049	2589	1	1	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0050	2590	1	0	0	0	0	1	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0051	2592	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0052	2592	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0053	2589	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0054	2589	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0055	2589	1	1	0	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0056	2591	1	0	1	0	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0057	2589	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0058	2589	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDLR_chr19_11084463_11138820	0/0	t0059	2589	1	0	0	1	0	0	copy fasta	LDLR	chr19	11084463	11138820
LDOC1_chrX_141168235_141182129	1/1	t0001	3455	171	30	31	87	5	16	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0002	3455	67	14	11	28	4	10	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0003	3455	46	3	17	21	0	5	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0004	3455	8	6	2	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129