JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LDOC1_chrX_141168235_141182129	0/0	t0005	3455	5	5	0	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0006	3455	4	4	0	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0007	3455	3	2	1	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0008	3455	3	3	0	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0009	3455	2	2	0	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0010	3455	2	2	0	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0011	3455	2	2	0	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0012	3456	1	0	0	1	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0013	3455	1	1	0	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0014	3455	1	0	1	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0015	3458	1	0	0	1	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0016	3456	1	0	0	1	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0017	3455	1	1	0	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0018	3455	1	1	0	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0019	3455	1	1	0	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0020	3453	1	0	0	1	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0021	3455	1	1	0	0	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0022	3452	1	0	0	0	0	1	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0023	3455	1	0	0	1	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0024	3455	1	0	0	1	0	0	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0025	3455	1	0	0	0	0	1	copy fasta	LDOC1	chrX	141168235	141182129
LDOC1_chrX_141168235_141182129	0/0	t0026	3455	1	0	0	0	0	1	copy fasta	LDOC1	chrX	141168235	141182129
LEAP2_chr5_132868668_132880046	0/1	t0001	629	142	30	27	60	6	18	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	1/0	t0002	628	131	14	17	90	2	7	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0003	629	42	2	5	25	2	8	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0004	631	31	20	8	0	1	2	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0005	630	21	6	4	8	0	3	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0006	630	17	4	0	13	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0007	629	8	1	2	3	0	2	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0008	632	7	4	2	1	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0009	632	7	6	1	0	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0010	630	6	0	3	0	3	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0011	630	5	4	0	1	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0012	628	5	1	1	2	0	1	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0013	631	3	3	0	0	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0014	629	2	2	0	0	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0015	628	2	1	1	0	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0016	626	2	0	0	2	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0017	629	1	0	0	0	0	1	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0018	631	1	0	0	1	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0019	630	1	0	1	0	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0020	629	1	0	0	1	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LEAP2_chr5_132868668_132880046	0/0	t0021	630	1	0	0	1	0	0	copy fasta	LEAP2	chr5	132868668	132880046
LECT2_chr5_135941904_135959983	1/0	t0001	578	160	30	18	90	8	13	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	t0002	578	106	6	16	74	5	5	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	t0003	578	99	24	12	45	4	14	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/1	t0004	578	54	12	14	21	1	5	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	t0005	578	15	12	3	0	0	0	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	t0006	578	5	1	3	0	0	1	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	t0007	578	4	4	0	0	0	0	copy fasta	LECT2	chr5	135941904	135959983