JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LECT2_chr5_135941904_135959983	0/0	t0008	575	3	2	1	0	0	0	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	t0009	578	2	2	0	0	0	0	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	t0010	578	1	0	0	1	0	0	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	t0011	578	1	0	1	0	0	0	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	t0012	578	1	0	0	1	0	0	copy fasta	LECT2	chr5	135941904	135959983
LECT2_chr5_135941904_135959983	0/0	t0013	578	1	1	0	0	0	0	copy fasta	LECT2	chr5	135941904	135959983
LEF1_chr4_108042548_108173932	0/0	t0001	2376	80	17	13	36	5	9	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0002	2376	71	6	16	33	6	10	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	1/1	t0003	2376	54	35	8	5	0	4	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0004	2376	9	4	0	2	0	3	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0005	2376	7	0	4	3	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0006	2376	6	6	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0007	2376	5	5	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0008	2376	4	0	1	0	3	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0009	2376	4	0	2	0	1	1	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0010	2376	3	3	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0011	2377	3	3	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0012	2376	2	2	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0013	2376	2	2	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0014	2376	2	0	0	0	0	2	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0015	2376	1	0	0	0	1	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0016	2376	1	1	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0017	2376	1	0	0	1	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0018	2376	1	1	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0019	2376	1	1	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0020	2376	1	1	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0021	2376	1	0	1	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0022	2376	1	1	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0023	2376	1	0	0	0	0	1	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0024	2376	1	1	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0025	2376	1	1	0	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEF1_chr4_108042548_108173932	0/0	t0026	2376	1	0	1	0	0	0	copy fasta	LEF1	chr4	108042548	108173932
LEFTY1_chr1_225881282_225894146	1/1	t0001	526	354	69	69	162	15	37	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	t0002	526	68	6	5	53	0	4	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	t0003	526	21	21	0	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	t0004	526	3	0	2	0	1	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	t0005	526	3	1	2	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	t0006	526	2	0	0	2	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	t0007	526	1	0	0	0	0	1	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	t0008	526	1	0	0	1	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY1_chr1_225881282_225894146	0/0	t0009	526	1	1	0	0	0	0	copy fasta	LEFTY1	chr1	225881282	225894146
LEFTY2_chr1_225931603_225946220	1/1	t0001	919	437	83	81	209	18	44	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	t0002	919	6	6	0	0	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	t0003	919	6	6	0	0	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	t0004	919	2	2	0	0	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	t0005	919	1	0	0	1	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	t0006	919	1	0	1	0	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEFTY2_chr1_225931603_225946220	0/0	t0007	919	1	1	0	0	0	0	copy fasta	LEFTY2	chr1	225931603	225946220
LEKR1_chr3_156821353_157051129	1/1	t0001	448	239	72	49	81	12	23	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	t0002	448	1	0	0	1	0	0	copy fasta	LEKR1	chr3	156821353	157051129