Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APBB3_chr5_140553268_140569598	0/0	t0009	671	1	1	0	0	0	0	copy fasta	APBB3	chr5	140553268	140569598
APBB3_chr5_140553268_140569598	0/0	t0010	671	1	1	0	0	0	0	copy fasta	APBB3	chr5	140553268	140569598
APC2_chr19_1445121_1478244	1/1	t0001	3268	231	20	65	97	12	35	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0002	3268	17	13	0	2	1	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0003	3262	12	11	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0004	3268	9	9	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0005	3268	7	0	0	7	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0006	3268	6	6	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0007	3268	5	5	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0008	3268	5	1	4	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0009	3268	4	0	3	0	1	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0010	3268	4	0	0	4	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0011	3268	3	0	2	0	0	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0012	3268	3	3	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0013	3268	2	0	1	0	0	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0014	3268	2	0	0	2	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0015	3268	2	2	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0016	3268	2	2	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0017	3268	2	0	0	2	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0018	3268	2	0	0	2	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0019	3268	2	1	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0020	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0021	3262	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0022	3268	1	0	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0023	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0024	3268	1	0	0	0	0	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0025	3268	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0026	3268	1	0	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0027	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0028	3268	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0029	3268	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0030	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0031	3268	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0032	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0033	3268	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0034	3268	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0035	3268	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0036	3268	1	0	0	0	0	1	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0037	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0038	3268	1	0	0	1	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0039	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0040	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0041	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0042	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0043	3268	1	0	1	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0044	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0045	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0046	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0047	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APC2_chr19_1445121_1478244	0/0	t0048	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244