JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LEKR1_chr3_156821353_157051129	0/0	t0003	448	1	0	0	0	0	1	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	t0004	448	1	0	0	1	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	t0005	448	1	0	1	0	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LEKR1_chr3_156821353_157051129	0/0	t0006	448	1	0	0	1	0	0	copy fasta	LEKR1	chr3	156821353	157051129
LELP1_chr1_153198430_153210120	1/1	t0001	240	455	81	82	226	16	48	copy fasta	LELP1	chr1	153198430	153210120
LELP1_chr1_153198430_153210120	0/0	t0002	240	3	3	0	0	0	0	copy fasta	LELP1	chr1	153198430	153210120
LELP1_chr1_153198430_153210120	0/0	t0003	240	2	2	0	0	0	0	copy fasta	LELP1	chr1	153198430	153210120
LELP1_chr1_153198430_153210120	0/0	t0004	240	2	2	0	0	0	0	copy fasta	LELP1	chr1	153198430	153210120
LELP1_chr1_153198430_153210120	0/0	t0005	240	2	2	0	0	0	0	copy fasta	LELP1	chr1	153198430	153210120
LEMD1_chr1_205376378_205427056	1/1	t0001	386	390	94	76	160	14	44	copy fasta	LEMD1	chr1	205376378	205427056
LEMD2_chr6_33766213_33794130	0/0	t0001	1415	129	12	16	84	4	13	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0002	1430	86	16	27	29	8	6	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	1/1	t0003	1430	40	20	6	9	3	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0004	1430	34	22	4	2	1	5	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0005	1430	29	7	1	19	0	2	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0006	1430	21	2	7	7	2	3	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0007	1430	18	14	2	1	0	1	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0008	1430	14	0	2	12	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0009	1431	12	5	3	2	0	2	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0010	1430	3	1	2	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0011	1415	2	0	0	0	0	2	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0012	1430	2	0	0	2	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0013	1430	1	0	0	1	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0014	1415	1	0	0	1	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0015	1431	1	1	0	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0016	1431	1	0	1	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0017	1430	1	0	1	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0018	1431	1	0	1	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0019	1415	1	0	1	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0020	1415	1	0	1	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0021	1415	1	0	1	0	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD2_chr6_33766213_33794130	0/0	t0022	1416	1	0	0	1	0	0	copy fasta	LEMD2	chr6	33766213	33794130
LEMD3_chr12_65164583_65253355	1/0	t0001	2045	234	47	32	115	10	29	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/1	t0002	2045	61	18	22	8	1	11	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0003	2045	39	1	1	35	1	1	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0004	2045	31	0	0	30	0	1	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0005	2045	14	14	0	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0006	2045	5	5	0	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0007	2045	5	0	0	5	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0008	2045	2	2	0	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0009	2045	1	0	0	1	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0010	2045	1	0	0	1	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0011	2045	1	1	0	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0012	2045	1	0	1	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0013	2045	1	1	0	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0014	2045	1	0	0	1	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LEMD3_chr12_65164583_65253355	0/0	t0015	2045	1	1	0	0	0	0	copy fasta	LEMD3	chr12	65164583	65253355
LENEP_chr1_154988586_154999315	1/1	t0001	545	307	92	62	97	14	40	copy fasta	LENEP	chr1	154988586	154999315
LENEP_chr1_154988586_154999315	0/0	t0002	545	1	0	0	1	0	0	copy fasta	LENEP	chr1	154988586	154999315
LENG1_chr19_54150161_54164721	0/1	t0001	587	417	96	79	179	18	44	copy fasta	LENG1	chr19	54150161	54164721