JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LENG1_chr19_54150161_54164721	0/0	t0002	587	2	1	1	0	0	0	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	t0003	587	1	1	0	0	0	0	copy fasta	LENG1	chr19	54150161	54164721
LENG1_chr19_54150161_54164721	0/0	t0004	587	1	0	0	1	0	0	copy fasta	LENG1	chr19	54150161	54164721
LENG8_chr19_54444199_54467016	0/0	t0001	1256	215	62	39	78	6	30	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0002	1256	148	8	27	91	6	16	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0003	1256	15	13	1	0	0	1	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0004	1256	11	0	0	11	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0005	1256	8	0	1	7	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0006	1256	8	6	1	0	0	1	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0007	1256	5	5	0	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0008	1256	4	0	3	0	1	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0009	1256	2	0	1	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0010	1256	2	0	2	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0011	1256	2	0	0	2	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0012	1256	2	0	0	2	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/1	t0013	1256	2	0	0	0	1	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0014	1256	1	0	1	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0015	1256	1	1	0	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0016	1256	1	1	0	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0017	1256	1	1	0	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0018	1256	1	0	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0019	1256	1	0	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	t0020	1256	1	1	0	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG9_chr19_54456732_54468778	0/0	t0001	611	196	60	42	59	7	28	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/1	t0002	611	144	15	31	76	7	14	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	t0003	611	24	0	3	21	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	t0004	611	23	6	1	13	0	3	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	t0005	611	17	14	2	0	0	1	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	t0006	611	7	0	0	7	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	t0007	611	3	0	1	2	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	t0008	611	2	2	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	t0009	611	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	t0010	611	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	t0011	611	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	t0012	611	1	1	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	t0013	611	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LEO1_chr15_51933025_51976778	1/1	t0001	165	386	92	76	172	12	32	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	t0002	165	2	0	2	0	0	0	copy fasta	LEO1	chr15	51933025	51976778
LEPROTL1_chr8_30090408_30113524	0/1	t0001	2769	217	36	41	101	10	28	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0002	2768	79	7	10	55	4	3	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0003	2769	33	0	5	28	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	1/0	t0004	2768	26	20	2	0	1	2	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0005	2769	16	15	1	0	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0006	2763	7	6	1	0	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0007	2768	4	0	0	4	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0008	2768	4	4	0	0	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0009	2769	3	0	0	3	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0010	2769	3	0	2	0	0	1	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0011	2769	3	3	0	0	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0012	2769	2	2	0	0	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524