JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LEPROTL1_chr8_30090408_30113524	0/0	t0013	2769	2	0	2	0	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0014	2769	2	0	0	0	0	2	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0015	2769	2	0	0	2	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0016	2769	1	0	1	0	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0017	2769	1	0	0	0	1	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0018	2768	1	0	0	0	0	1	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0019	2768	1	0	0	1	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0020	2768	1	1	0	0	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0021	2768	1	0	0	1	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0022	2769	1	0	0	1	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0023	2769	1	0	1	0	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0024	2768	1	0	0	1	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0025	2769	1	0	0	1	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0026	2769	1	0	0	1	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0027	2769	1	0	0	0	0	1	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROTL1_chr8_30090408_30113524	0/0	t0028	2769	1	0	0	1	0	0	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROT_chr1_65415668_65441007	0/0	t0001	4146	102	6	5	78	4	9	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/1	t0002	4145	39	1	20	5	4	8	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0003	4151	31	2	10	11	1	7	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0004	4145	28	18	4	6	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0005	4146	27	6	9	4	2	6	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0006	4145	19	14	3	2	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0007	4151	16	6	1	2	3	4	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0008	4145	12	1	8	1	0	2	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0009	4146	11	0	2	9	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0010	4147	9	5	4	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0011	4147	6	0	0	6	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0012	4148	5	4	1	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0013	4147	5	5	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0014	4134	4	4	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0015	4145	4	2	0	0	0	2	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0016	4152	3	0	1	2	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0017	4146	3	0	0	3	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0018	4146	3	0	1	2	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0019	4145	2	0	0	0	0	2	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0020	4151	2	0	0	2	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0021	4146	2	0	0	2	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0022	4147	2	1	0	0	0	1	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0023	4147	2	0	0	0	0	2	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0024	4146	2	2	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0025	4147	2	1	1	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0026	4149	2	1	1	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0027	4148	2	2	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0028	4147	2	1	1	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0029	4145	2	0	0	0	2	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0030	4134	2	2	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0031	4145	2	0	0	0	0	2	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0032	4147	2	0	2	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0033	4145	2	0	0	2	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0034	4144	1	0	0	0	0	1	copy fasta	LEPROT	chr1	65415668	65441007