JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LEPROT_chr1_65415668_65441007	0/0	t0035	4149	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0036	4151	1	0	0	0	0	1	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0037	4150	1	0	1	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0038	4148	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0039	4147	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0040	4146	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0041	4146	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0042	4146	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0043	4146	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0044	4188	1	0	0	0	1	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0045	4145	1	0	1	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0046	4146	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0047	4148	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0048	4146	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0049	4147	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0050	4146	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0051	4146	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0052	4146	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0053	4145	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0054	4145	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0055	4145	1	0	0	0	0	1	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0056	4147	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0057	4152	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0058	4146	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0059	4145	1	0	0	0	0	1	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0060	4151	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0061	4151	1	0	0	0	0	1	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0062	4152	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0063	4152	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0064	4151	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0065	4148	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0066	4145	1	0	1	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0067	4145	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0068	4145	1	0	1	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0069	4147	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0070	4146	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	1/0	t0071	4146	1	0	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0072	4146	1	0	0	0	1	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0073	4145	1	0	1	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0074	4148	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0075	4147	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0076	4147	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0077	4145	1	0	0	1	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	t0078	4145	1	0	1	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPR_chr1_65415668_65646559	0/0	t0001	4715	37	4	8	19	4	2	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	1/0	t0002	4714	29	12	7	1	1	7	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0003	4714	28	10	10	3	1	4	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/1	t0004	4718	18	1	8	5	1	2	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0005	4715	17	4	9	1	2	1	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0006	4719	11	2	1	3	0	5	copy fasta	LEPR	chr1	65415668	65646559