JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LEPR_chr1_65415668_65646559	0/0	t0007	4716	9	0	4	0	4	1	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0008	4719	8	6	0	0	0	2	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0009	4710	4	0	0	4	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0010	4713	3	1	0	1	0	1	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0011	4714	3	2	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0012	4713	3	2	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0013	4714	3	1	2	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0014	4718	2	0	1	0	0	1	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0015	4719	2	2	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0016	4714	2	0	1	0	1	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0017	4719	2	1	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0018	4718	2	1	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0019	4719	2	2	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0020	4717	2	2	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0021	4719	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0022	4719	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0023	4717	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0024	4718	1	0	0	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0025	4717	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0026	4719	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0027	4716	1	0	0	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0028	4716	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0029	4717	1	0	0	0	0	1	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0030	4714	1	0	0	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0031	4714	1	0	0	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0032	4714	1	0	0	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0033	4714	1	0	0	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0034	4714	1	0	0	0	0	1	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0035	4715	1	0	0	0	0	1	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0036	4715	1	0	0	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0037	4716	1	0	0	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0038	4718	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0039	4718	1	0	0	0	1	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0040	4719	1	0	0	0	1	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0041	4717	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0042	4714	1	0	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0043	4715	1	0	0	0	1	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0044	4714	1	0	0	0	0	1	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0045	4715	1	0	0	0	1	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0046	4716	1	0	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0047	4718	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0048	4715	1	0	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	t0049	4714	1	0	0	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEP_chr7_128236278_128262629	0/0	t0001	2927	100	2	23	63	5	7	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0002	2924	78	16	16	31	4	11	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0003	2924	46	18	10	9	3	6	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0004	2927	29	0	9	10	2	8	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0005	2924	14	0	0	13	0	1	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0006	2928	11	0	4	6	0	1	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0007	2926	9	9	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629