JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LEP_chr7_128236278_128262629	0/0	t0008	2925	8	7	0	0	0	1	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0009	2926	7	5	2	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0010	2924	7	7	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0011	2926	7	0	1	5	1	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0012	2927	6	2	1	3	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	1/0	t0013	2924	6	5	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0014	2925	4	4	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0015	2925	3	0	0	3	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0016	2926	3	3	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0017	2927	3	0	0	3	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0018	2924	3	0	0	0	0	3	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0019	2927	3	1	1	0	0	1	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0020	2923	3	0	0	1	0	2	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0021	2925	2	1	1	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0022	2925	2	2	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0023	2923	2	0	0	1	1	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0024	2923	2	2	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0025	2923	2	2	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0026	2924	2	1	1	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0027	2927	2	0	0	0	0	2	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0028	2923	2	2	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0029	2924	1	1	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0030	2927	1	0	0	1	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0031	2927	1	0	0	1	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0032	2924	1	0	0	0	1	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0033	2924	1	0	0	1	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0034	2924	1	0	1	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0035	2924	1	1	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0036	2924	1	0	1	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0037	2923	1	1	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0038	2923	1	1	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0039	2924	1	0	0	0	0	1	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0040	2924	1	1	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0041	2928	1	0	0	1	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0042	2927	1	0	1	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0043	2927	1	0	1	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0044	2927	1	0	0	1	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0045	2924	1	1	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0046	2927	1	0	0	0	0	1	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0047	2926	1	0	0	0	0	1	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0048	2926	1	0	0	0	1	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0049	2924	1	0	0	1	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0050	2927	1	0	0	1	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0051	2924	1	1	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0052	2926	1	1	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0053	2925	1	0	1	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0054	2927	1	0	1	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0055	2927	1	0	0	1	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0056	2925	1	0	1	0	0	0	copy fasta	LEP	chr7	128236278	128262629
LEP_chr7_128236278_128262629	0/0	t0057	2927	1	1	0	0	0	0	copy fasta	LEP	chr7	128236278	128262629