JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LETM1_chr4_1806479_1861156	0/1	t0001	3152	120	31	27	31	10	20	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0002	3153	27	5	10	8	1	3	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0003	3153	4	4	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0004	3153	4	4	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0005	3152	4	4	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	1/0	t0006	3152	3	2	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0007	3152	3	0	0	3	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0008	3152	2	2	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0009	3151	2	0	1	1	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0010	3151	2	1	0	1	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0011	3152	2	2	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0012	3152	2	1	1	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0013	3154	2	1	1	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0014	3152	2	0	1	0	1	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0015	3139	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0016	3140	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0017	3153	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0018	3152	1	0	1	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0019	3154	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0020	3152	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0021	3140	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0022	3152	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0023	3152	1	0	0	1	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0024	3152	1	0	0	1	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0025	3140	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0026	3151	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0027	3154	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0028	3152	1	0	0	1	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0029	3153	1	0	0	1	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0030	3153	1	0	0	0	0	1	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0031	3154	1	0	0	0	0	1	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0032	3153	1	0	0	1	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0033	3152	1	0	0	0	0	1	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0034	3153	1	1	0	0	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM1_chr4_1806479_1861156	0/0	t0035	3152	1	0	0	1	0	0	copy fasta	LETM1	chr4	1806479	1861156
LETM2_chr8_38381476_38414527	1/1	t0001	1381	354	66	72	168	14	32	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	t0002	1381	2	1	0	0	0	1	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	t0003	1381	1	0	0	1	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	t0004	1381	1	0	0	1	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	t0005	1381	1	1	0	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	t0006	1366	1	0	0	1	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	t0007	1381	1	1	0	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	t0008	1381	1	0	0	0	0	1	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	t0009	1381	1	0	0	1	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETM2_chr8_38381476_38414527	0/0	t0010	1381	1	1	0	0	0	0	copy fasta	LETM2	chr8	38381476	38414527
LETMD1_chr12_51043327_51065424	0/0	t0001	1024	134	33	14	74	2	11	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	t0002	1024	89	24	13	41	3	8	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	t0003	1024	64	5	13	45	0	1	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	t0004	1024	64	17	16	25	0	6	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	t0005	1024	39	6	20	0	5	8	copy fasta	LETMD1	chr12	51043327	51065424