JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LETMD1_chr12_51043327_51065424	1/1	t0006	1024	16	4	0	1	2	7	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	t0007	1024	4	3	0	0	0	1	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	t0008	1024	2	0	2	0	0	0	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	t0009	1024	2	2	0	0	0	0	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	t0010	1024	1	0	0	1	0	0	copy fasta	LETMD1	chr12	51043327	51065424
LETMD1_chr12_51043327_51065424	0/0	t0011	1024	1	0	0	1	0	0	copy fasta	LETMD1	chr12	51043327	51065424
LEUTX_chr19_39773854_39791291	1/1	t0001	224	444	66	78	232	18	48	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	t0002	224	29	28	1	0	0	0	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	t0003	224	1	0	0	1	0	0	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	t0004	224	1	0	0	1	0	0	copy fasta	LEUTX	chr19	39773854	39791291
LEUTX_chr19_39773854_39791291	0/0	t0005	224	1	0	1	0	0	0	copy fasta	LEUTX	chr19	39773854	39791291
LEXM_chr1_54801063_54847252	0/1	t0001	434	143	36	21	54	7	24	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	1/0	t0002	434	111	24	24	47	3	12	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	t0003	434	88	7	13	62	4	2	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	t0004	434	34	6	7	18	1	2	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	t0005	434	2	2	0	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	t0006	434	1	1	0	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	t0007	434	1	0	0	0	1	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	t0008	434	1	0	1	0	0	0	copy fasta	LEXM	chr1	54801063	54847252
LEXM_chr1_54801063_54847252	0/0	t0009	434	1	0	0	1	0	0	copy fasta	LEXM	chr1	54801063	54847252
LFNG_chr7_2514774_2533429	1/0	t0001	1306	315	56	56	150	14	38	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0002	1312	46	22	8	14	1	1	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/1	t0003	1312	17	0	15	1	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0004	1314	12	8	0	1	0	3	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0005	1306	5	3	1	0	1	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0006	1312	3	3	0	0	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0007	1306	2	0	0	2	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0008	1314	2	2	0	0	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0009	1306	2	1	0	1	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0010	1306	2	2	0	0	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0011	1306	1	0	0	1	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0012	1314	1	1	0	0	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0013	1306	1	0	0	1	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0014	1306	1	0	0	1	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0015	1312	1	1	0	0	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0016	1328	1	1	0	0	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0017	1306	1	0	0	1	0	0	copy fasta	LFNG	chr7	2514774	2533429
LFNG_chr7_2514774_2533429	0/0	t0018	1306	1	0	0	1	0	0	copy fasta	LFNG	chr7	2514774	2533429
LGALS12_chr11_63501084_63521772	0/0	t0001	755	290	23	56	169	13	29	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	t0002	755	90	27	17	28	1	17	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	t0003	755	25	25	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	t0004	755	13	11	2	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	t0005	755	6	6	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	t0006	755	2	1	1	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	t0007	755	1	0	0	0	1	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	t0008	755	1	1	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	t0009	755	1	1	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	t0010	755	1	0	0	1	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	t0011	755	1	1	0	0	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	t0012	755	1	0	0	1	0	0	copy fasta	LGALS12	chr11	63501084	63521772