JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LGALS12_chr11_63501084_63521772	0/0	t0013	755	1	0	0	0	1	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS12_chr11_63501084_63521772	0/0	t0014	755	1	0	0	1	0	0	copy fasta	LGALS12	chr11	63501084	63521772
LGALS13_chr19_39597524_39612474	1/1	t0001	181	446	94	70	220	16	44	copy fasta	LGALS13	chr19	39597524	39612474
LGALS14_chr19_39699481_39714444	1/1	t0001	180	451	98	78	212	18	43	copy fasta	LGALS14	chr19	39699481	39714444
LGALS14_chr19_39699481_39714444	0/0	t0002	180	1	0	0	0	0	1	copy fasta	LGALS14	chr19	39699481	39714444
LGALS16_chr19_39650913_39665647	1/1	t0001	177	442	86	74	216	18	46	copy fasta	LGALS16	chr19	39650913	39665647
LGALS1_chr22_37670636_37684802	1/1	t0001	121	403	87	63	192	18	41	copy fasta	LGALS1	chr22	37670636	37684802
LGALS1_chr22_37670636_37684802	0/0	t0002	121	17	5	9	0	0	3	copy fasta	LGALS1	chr22	37670636	37684802
LGALS2_chr22_37565248_37585087	1/1	t0001	198	455	91	78	218	18	48	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	t0002	198	4	4	0	0	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS2_chr22_37565248_37585087	0/0	t0003	198	1	1	0	0	0	0	copy fasta	LGALS2	chr22	37565248	37585087
LGALS3BP_chr17_78966255_78984923	1/1	t0001	445	446	98	77	209	13	47	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	t0002	445	5	0	0	5	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	t0003	445	2	0	1	0	0	1	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	t0004	445	2	2	0	0	0	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3BP_chr17_78966255_78984923	0/0	t0005	445	1	0	0	0	1	0	copy fasta	LGALS3BP	chr17	78966255	78984923
LGALS3_chr14_55124252_55150423	1/1	t0001	206	365	79	59	173	14	38	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	t0002	205	6	6	0	0	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	t0003	206	3	0	1	2	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	t0004	196	1	0	0	1	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	t0005	206	1	1	0	0	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS4_chr19_38796674_38817945	1/1	t0001	150	424	89	78	197	16	42	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	t0002	150	1	0	0	1	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	t0003	150	1	1	0	0	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS8_chr1_236518982_236557981	0/1	t0001	5001	131	2	29	78	7	14	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	1/0	t0002	5004	75	27	15	18	3	11	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0003	5004	65	0	4	51	2	8	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0004	5004	53	2	6	43	0	2	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0005	5005	22	18	2	0	0	2	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0006	5005	18	0	8	8	0	2	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0007	5001	12	11	1	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0008	4991	8	7	1	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0009	5000	7	2	2	0	1	2	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0010	5002	4	0	1	1	0	2	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0011	4991	3	2	1	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0012	5000	3	3	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0013	5000	3	3	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0014	4990	3	3	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0015	5004	3	3	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0016	5001	2	0	0	2	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0017	5002	2	2	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0018	5000	2	2	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0019	5001	2	0	2	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0020	5004	2	0	0	2	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0021	5004	2	0	0	0	0	2	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0022	5004	2	2	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0023	5005	2	2	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0024	5004	2	2	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0025	5006	1	1	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0026	5000	1	1	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981