JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LGALS8_chr1_236518982_236557981	0/0	t0027	5001	1	0	0	1	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0028	5001	1	0	0	1	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0029	5001	1	0	0	1	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0030	5000	1	0	0	1	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0031	5001	1	0	0	1	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0032	5001	1	0	1	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0033	5000	1	1	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0034	5004	1	0	0	0	0	1	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0035	5004	1	0	0	0	0	1	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0036	5004	1	1	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0037	5004	1	0	0	1	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0038	5004	1	1	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0039	5004	1	0	0	1	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0040	5004	1	0	1	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0041	5005	1	0	0	1	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0042	5005	1	0	0	1	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0043	5005	1	0	1	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0044	5004	1	0	0	0	1	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0045	5004	1	0	1	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	t0046	5004	1	0	0	0	0	1	copy fasta	LGALS8	chr1	236518982	236557981
LGALS9B_chr17_20444395_20472539	0/0	t0001	648	191	31	29	101	6	24	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0002	648	49	10	17	16	3	3	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0003	648	37	0	19	3	6	9	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0004	648	28	0	0	26	0	2	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	1/0	t0005	648	25	0	1	23	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0006	648	22	15	5	2	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0007	648	12	5	3	0	3	1	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0008	648	8	1	7	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0009	648	7	1	1	4	0	1	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0010	648	7	7	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0011	648	5	5	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0012	648	4	1	1	2	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0013	648	4	0	1	0	0	3	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0014	648	4	0	0	0	0	4	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0015	648	3	0	0	3	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0016	648	2	2	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0017	648	2	0	0	2	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0018	648	2	2	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0019	648	2	2	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0020	648	2	2	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0021	648	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0022	648	1	0	1	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0023	648	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0024	648	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0025	648	1	0	1	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0026	648	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0027	648	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0028	648	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0029	648	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0030	648	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539