Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APC2_chr19_1445121_1478244	0/0	t0049	3268	1	1	0	0	0	0	copy fasta	APC2	chr19	1445121	1478244
APCDD1L_chr20_58454101_58520399	0/0	t0001	2381	101	20	26	44	4	7	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0002	2381	49	3	11	23	3	9	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/1	t0003	2382	47	14	8	21	0	3	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0004	2381	42	9	3	26	1	3	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0005	2381	17	5	8	4	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0006	2382	16	1	4	8	0	3	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0007	2382	12	2	0	7	0	3	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0008	2382	9	6	1	2	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0009	2382	8	7	1	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0010	2382	7	0	0	6	0	1	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0011	2382	5	1	0	4	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0012	2382	4	1	3	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0013	2381	4	0	0	4	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0014	2382	3	0	0	3	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0015	2382	3	3	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0016	2381	3	0	0	2	0	1	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0017	2381	3	0	0	3	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	1/0	t0018	2382	2	0	0	0	1	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0019	2382	2	2	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0020	2382	2	2	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0021	2382	2	1	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0022	2382	2	0	0	2	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0023	2382	2	0	0	0	2	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0024	2381	2	2	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0025	2382	1	0	1	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0026	2382	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0027	2382	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0028	2382	1	0	1	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0029	2383	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0030	2383	1	0	0	0	1	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0031	2382	1	0	0	0	0	1	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0032	2383	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0033	2382	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0034	2382	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0035	2382	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0036	2383	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0037	2383	1	0	0	0	1	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0038	2382	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0039	2381	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0040	2382	1	0	0	0	0	1	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0041	2381	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0042	2381	1	0	0	0	0	1	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0043	2381	1	0	1	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0044	2381	1	0	0	0	1	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0045	2382	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0046	2381	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0047	2382	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0048	2381	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0049	2381	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399