JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LGALS9B_chr17_20444395_20472539	0/0	t0031	648	1	0	0	0	0	1	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0032	648	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0033	648	1	0	0	1	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0034	648	1	0	0	1	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0035	648	1	0	0	1	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0036	648	1	0	0	1	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	t0037	648	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9C_chr17_18471789_18499945	1/0	t0001	645	207	35	26	122	4	19	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	t0002	645	78	12	18	37	2	9	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	t0003	645	2	2	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	t0004	645	2	2	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	t0005	645	1	1	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	t0006	645	1	0	0	1	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9_chr17_27626188_27654560	1/1	t0001	657	318	68	48	152	14	34	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	t0002	657	110	12	30	53	4	11	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	t0003	657	9	5	2	1	0	1	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	t0004	657	4	4	0	0	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	t0005	657	3	3	0	0	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	t0006	657	1	0	0	1	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	t0007	657	1	0	0	1	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALSL_chr2_64449162_64466381	0/0	t0001	3338	151	19	26	94	5	7	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/1	t0002	3338	98	11	26	35	7	18	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	1/0	t0003	3338	62	17	17	13	6	8	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0004	3338	32	3	3	23	0	3	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0005	3333	25	15	1	7	0	2	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0006	3338	9	9	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0007	3337	5	5	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0008	3338	4	0	0	4	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0009	3338	3	3	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0010	3338	2	0	0	0	0	2	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0011	3338	2	2	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0012	3338	2	0	0	0	0	2	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0013	3338	2	0	0	0	0	2	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0014	3357	2	0	0	0	0	2	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0015	3338	2	0	0	2	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0016	3338	1	1	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0017	3333	1	0	0	0	0	1	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0018	3333	1	1	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0019	3333	1	0	1	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0020	3338	1	0	0	1	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0021	3338	1	1	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0022	3338	1	0	1	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0023	3338	1	1	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0024	3337	1	0	0	1	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0025	3337	1	1	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0026	3338	1	0	0	0	0	1	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0027	3338	1	0	1	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0028	3338	1	0	0	1	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0029	3338	1	1	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0030	3339	1	0	1	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381