JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LGALSL_chr2_64449162_64466381	0/0	t0031	3339	1	0	1	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0032	3339	1	0	0	1	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0033	3338	1	1	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0034	3338	1	1	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0035	3339	1	1	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	t0036	3338	1	1	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGI1_chr10_93752936_93803159	1/1	t0001	566	372	90	73	156	16	35	copy fasta	LGI1	chr10	93752936	93803159
LGI1_chr10_93752936_93803159	0/0	t0002	566	3	0	2	0	0	1	copy fasta	LGI1	chr10	93752936	93803159
LGI1_chr10_93752936_93803159	0/0	t0003	566	1	0	1	0	0	0	copy fasta	LGI1	chr10	93752936	93803159
LGI2_chr4_24993847_25035946	0/0	t0001	4857	69	1	11	44	2	11	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0002	4856	68	3	10	51	1	3	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	1/1	t0003	4858	66	16	22	8	5	13	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0004	4856	58	18	5	24	1	10	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0005	4860	50	23	4	19	0	4	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0006	4857	37	1	12	18	2	4	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0007	4857	31	0	2	29	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0008	4857	11	9	2	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0009	4857	10	10	0	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0010	4856	5	0	5	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0011	4856	5	0	0	5	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0012	4858	4	0	0	4	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0013	4858	4	0	0	4	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0014	4857	3	3	0	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0015	4857	3	3	0	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0016	4857	2	2	0	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0017	4857	2	2	0	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0018	4857	2	2	0	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0019	4858	2	0	0	2	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0020	4860	2	0	0	0	0	2	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0021	4857	2	0	0	2	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0022	4860	1	0	0	1	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0023	4856	1	1	0	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0024	4855	1	0	0	1	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0025	4856	1	0	0	1	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0026	4856	1	0	0	1	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0027	4856	1	0	1	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0028	4856	1	0	0	1	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0029	4857	1	1	0	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0030	4861	1	1	0	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0031	4858	1	0	0	0	1	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0032	4858	1	0	0	1	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0033	4857	1	0	0	0	1	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0034	4858	1	1	0	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0035	4857	1	1	0	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0036	4858	1	0	1	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0037	4857	1	0	0	0	1	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0038	4856	1	0	0	0	0	1	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	t0039	4856	1	0	1	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI3_chr8_22141830_22161806	0/0	t0001	1595	214	19	43	117	5	30	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/1	t0002	1595	62	28	15	2	6	10	copy fasta	LGI3	chr8	22141830	22161806