JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LGI3_chr8_22141830_22161806	0/0	t0003	1595	49	1	13	24	3	8	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0004	1595	14	1	2	7	3	1	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0005	1595	7	7	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0006	1595	7	7	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0007	1595	7	7	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0008	1595	6	6	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0009	1595	5	0	0	5	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0010	1595	5	5	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0011	1595	4	4	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0012	1595	4	2	2	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0013	1595	3	0	2	1	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0014	1595	3	3	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0015	1595	2	0	1	0	1	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0016	1595	2	1	1	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0017	1595	2	0	0	2	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0018	1595	2	0	0	2	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0019	1595	1	0	0	0	0	1	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0020	1595	1	1	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	1/0	t0021	1595	1	0	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0022	1595	1	1	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0023	1595	1	0	0	1	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0024	1595	1	1	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0025	1595	1	0	0	1	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0026	1595	1	1	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0027	1595	1	0	1	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	t0028	1595	1	1	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI4_chr19_35119513_35140059	1/1	t0001	1060	173	50	27	80	7	7	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	t0002	1059	115	27	19	39	4	26	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	t0003	1060	94	5	26	53	3	7	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	t0004	1059	4	0	0	1	0	3	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	t0005	1060	3	3	0	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	t0006	1060	2	1	1	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	t0007	1060	2	2	0	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	t0008	1060	1	0	1	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	t0009	1059	1	1	0	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	t0010	1059	1	0	0	1	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	t0011	1060	1	1	0	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	t0012	1059	1	0	0	0	0	1	copy fasta	LGI4	chr19	35119513	35140059
LGMN_chr14_92698809_92753627	1/1	t0001	679	399	78	78	181	18	42	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	t0002	667	11	11	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	t0003	679	3	3	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	t0004	673	2	2	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	t0005	679	2	2	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	t0006	673	1	1	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	t0007	679	1	0	0	1	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGMN_chr14_92698809_92753627	0/0	t0008	679	1	1	0	0	0	0	copy fasta	LGMN	chr14	92698809	92753627
LGR4_chr11_27360961_27477790	0/0	t0001	2395	31	9	8	9	2	3	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0002	2395	30	1	7	20	1	1	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0003	2395	27	3	6	12	3	3	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/1	t0004	2395	25	3	4	14	2	1	copy fasta	LGR4	chr11	27360961	27477790