JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LGR4_chr11_27360961_27477790	0/0	t0005	2395	22	8	5	3	3	3	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	1/0	t0006	2395	17	14	0	2	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0007	2395	15	5	3	5	0	2	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0008	2395	12	0	2	10	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0009	2395	9	6	0	3	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0010	2395	6	3	0	1	0	2	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0011	2395	6	0	0	5	0	1	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0012	2395	6	0	0	6	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0013	2395	5	5	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0014	2395	4	4	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0015	2395	3	0	0	3	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0016	2395	3	0	3	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0017	2395	2	2	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0018	2395	2	2	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0019	2395	1	0	0	0	0	1	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0020	2395	1	0	0	1	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0021	2395	1	0	0	1	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0022	2395	1	0	0	0	0	1	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0023	2395	1	0	0	0	0	1	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0024	2395	1	0	0	0	0	1	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0025	2395	1	1	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0026	2395	1	0	0	1	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0027	2395	1	1	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0028	2395	1	0	0	1	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0029	2395	1	0	0	0	1	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0030	2395	1	1	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0031	2395	1	1	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0032	2395	1	1	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0033	2395	1	0	0	1	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0034	2395	1	0	0	1	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0035	2395	1	1	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0036	2395	1	1	0	0	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR4_chr11_27360961_27477790	0/0	t0037	2395	1	0	0	1	0	0	copy fasta	LGR4	chr11	27360961	27477790
LGR5_chr12_71434798_71591310	0/1	t0001	1860	59	13	14	18	4	9	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	1/0	t0002	1860	52	2	16	24	2	7	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0003	1860	39	0	8	25	4	2	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0004	1860	14	6	2	5	0	1	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0005	1860	7	7	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0006	1860	5	4	1	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0007	1860	3	2	1	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0008	1860	3	2	1	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0009	1860	3	3	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0010	1860	3	3	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0011	1860	2	2	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0012	1860	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0013	1860	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0014	1860	1	0	0	1	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0015	1860	1	0	1	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0016	1860	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0017	1860	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310