JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LGR5_chr12_71434798_71591310	0/0	t0018	1860	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0019	1860	1	1	0	0	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0020	1860	1	0	0	1	0	0	copy fasta	LGR5	chr12	71434798	71591310
LGR5_chr12_71434798_71591310	0/0	t0021	1860	1	0	0	0	0	1	copy fasta	LGR5	chr12	71434798	71591310
LGR6_chr1_202188799_202324761	0/1	t0001	746	114	14	35	41	4	19	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	t0002	746	62	9	12	30	3	8	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	1/0	t0003	746	46	32	4	6	2	1	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	t0004	746	38	13	2	22	1	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	t0005	746	1	0	0	1	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGR6_chr1_202188799_202324761	0/0	t0006	746	1	0	1	0	0	0	copy fasta	LGR6	chr1	202188799	202324761
LGSN_chr6_63270951_63324983	0/0	t0001	4111	80	13	16	40	5	6	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0002	4111	66	2	19	36	3	6	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	1/0	t0003	4111	64	22	14	19	4	4	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0004	4111	15	1	1	9	0	4	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0005	4110	8	8	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0006	4111	8	0	0	8	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0007	4112	8	1	1	6	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0008	4112	6	1	1	4	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0009	4112	6	0	5	1	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0010	4104	6	6	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0011	4112	3	0	0	3	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0012	4111	3	3	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/1	t0013	4112	3	2	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0014	4110	2	2	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0015	4111	2	2	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0016	4109	2	2	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0017	4111	2	0	0	2	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0018	4104	2	2	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0019	4104	2	1	1	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0020	4109	2	2	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0021	4112	1	0	0	0	0	1	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0022	4111	1	0	0	1	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0023	4111	1	0	0	1	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0024	4112	1	0	0	1	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0025	4112	1	0	0	1	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0026	4113	1	0	0	1	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0027	4109	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0028	4110	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0029	4108	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0030	4111	1	0	1	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0031	4111	1	0	1	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0032	4111	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0033	4111	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0034	4111	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0035	4111	1	0	1	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0036	4111	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0037	4111	1	0	0	1	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0038	4111	1	0	1	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0039	4104	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0040	4111	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983