JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LGSN_chr6_63270951_63324983	0/0	t0041	4109	1	1	0	0	0	0	copy fasta	LGSN	chr6	63270951	63324983
LGSN_chr6_63270951_63324983	0/0	t0042	4111	1	0	0	0	0	1	copy fasta	LGSN	chr6	63270951	63324983
LHB_chr19_49010980_49022091	1/1	t0001	99	391	93	70	162	15	49	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	t0002	99	18	3	4	9	1	1	copy fasta	LHB	chr19	49010980	49022091
LHB_chr19_49010980_49022091	0/0	t0003	99	1	0	0	1	0	0	copy fasta	LHB	chr19	49010980	49022091
LHCGR_chr2_48681774_48760724	1/0	t0001	977	269	45	53	131	10	29	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/1	t0002	977	52	2	18	16	2	13	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	t0003	977	23	20	3	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	t0004	977	19	18	1	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	t0005	977	5	5	0	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	t0006	976	3	0	0	3	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	t0007	977	1	1	0	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	t0008	977	1	1	0	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHCGR_chr2_48681774_48760724	0/0	t0009	977	1	0	1	0	0	0	copy fasta	LHCGR	chr2	48681774	48760724
LHFPL1_chrX_112625648_112684938	1/1	t0001	897	215	60	36	93	6	18	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	t0002	897	6	6	0	0	0	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	t0003	897	6	2	3	0	0	1	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	t0004	897	6	0	2	3	1	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	t0005	897	5	5	0	0	0	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	t0006	897	2	2	0	0	0	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	t0007	897	2	2	0	0	0	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	t0008	896	1	0	0	1	0	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	t0009	898	1	0	0	0	0	1	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL1_chrX_112625648_112684938	0/0	t0010	897	1	1	0	0	0	0	copy fasta	LHFPL1	chrX	112625648	112684938
LHFPL2_chr5_78480230_78653772	0/0	t0001	4293	59	12	7	34	3	3	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0002	4292	32	2	13	7	4	6	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0003	4287	32	4	1	23	1	3	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0004	4293	21	2	12	4	2	1	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/1	t0005	4293	15	2	9	0	1	2	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0006	4293	12	10	2	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0007	4292	11	9	2	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0008	4293	10	10	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0009	4292	8	7	1	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0010	4293	7	0	0	7	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0011	4293	4	4	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0012	4293	4	4	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0013	4290	4	2	2	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0014	4292	4	0	4	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0015	4292	3	3	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0016	4293	2	0	1	0	1	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0017	4292	2	2	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0018	4293	1	0	0	1	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0019	4293	1	1	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0020	4293	1	1	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0021	4293	1	1	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0022	4293	1	0	0	0	0	1	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0023	4293	1	0	0	0	0	1	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0024	4293	1	1	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0025	4293	1	0	1	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	1/0	t0026	4291	1	0	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772