JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LHFPL2_chr5_78480230_78653772	0/0	t0027	4293	1	1	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0028	4293	1	0	0	0	0	1	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0029	4287	1	0	0	1	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0030	4292	1	1	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0031	4287	1	0	0	1	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0032	4292	1	0	1	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0033	4292	1	0	1	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0034	4293	1	0	0	1	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0035	4287	1	0	0	1	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0036	4293	1	1	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0037	4292	1	0	1	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0038	4292	1	1	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0039	4291	1	1	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0040	4291	1	1	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL2_chr5_78480230_78653772	0/0	t0041	4286	1	1	0	0	0	0	copy fasta	LHFPL2	chr5	78480230	78653772
LHFPL3_chr7_104323603_104913561	0/0	t0001	2524	16	3	9	0	2	2	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	t0002	2524	14	3	6	2	3	0	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	t0003	2524	13	2	1	5	3	2	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	t0004	2524	13	2	3	7	0	1	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	t0005	2518	5	2	2	0	0	1	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	t0006	2518	5	2	1	2	0	0	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	t0007	2518	5	2	2	1	0	0	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	t0008	2518	4	0	0	4	0	0	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	t0009	2524	3	3	0	0	0	0	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	t0010	2518	3	3	0	0	0	0	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	t0011	2524	2	2	0	0	0	0	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	t0012	2518	2	2	0	0	0	0	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL3_chr7_104323603_104913561	0/0	t0013	2524	1	0	0	1	0	0	copy fasta	LHFPL3	chr7	104323603	104913561
LHFPL4_chr3_9493361_9558822	0/0	t0001	4157	90	10	20	47	2	11	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0002	4157	54	22	10	17	2	3	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0003	4157	49	0	3	46	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0004	4157	28	3	14	4	2	5	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	1/0	t0005	4157	18	1	0	16	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0006	4157	12	6	1	5	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/1	t0007	4157	9	1	1	3	2	1	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0008	4155	8	8	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0009	4157	8	3	1	2	0	2	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0010	4156	7	7	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0011	4157	6	0	1	0	0	5	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0012	4155	5	0	1	0	0	4	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0013	4155	3	0	1	0	2	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0014	4157	3	0	2	0	1	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0015	4155	3	0	0	0	3	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0016	4158	3	0	3	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0017	4157	3	3	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0018	4157	3	0	0	3	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0019	4155	3	3	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0020	4155	3	3	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0021	4153	3	0	1	0	0	2	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0022	4157	2	2	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822