JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LHFPL4_chr3_9493361_9558822	0/0	t0023	4155	2	2	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0024	4156	2	2	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0025	4156	2	2	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0026	4158	2	2	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0027	4157	2	2	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0028	4157	2	2	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0029	4157	2	0	0	2	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0030	4157	2	0	0	0	0	2	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0031	4155	2	0	2	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0032	4155	1	1	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0033	4157	1	0	1	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0034	4157	1	1	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0035	4155	1	1	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0036	4153	1	0	1	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0037	4157	1	0	0	0	0	1	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0038	4155	1	0	0	0	1	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0039	4155	1	1	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0040	4157	1	0	0	0	1	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0041	4157	1	0	0	1	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0042	4157	1	0	0	0	0	1	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0043	4157	1	0	0	0	0	1	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0044	4157	1	0	0	1	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0045	4157	1	0	1	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0046	4155	1	1	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0047	4158	1	0	0	1	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0048	4156	1	1	0	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0049	4157	1	0	1	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL4_chr3_9493361_9558822	0/0	t0050	4157	1	0	1	0	0	0	copy fasta	LHFPL4	chr3	9493361	9558822
LHFPL5_chr6_35800352_35829070	0/0	t0001	1423	86	5	19	54	1	7	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0002	1421	57	8	7	33	3	6	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0003	1411	55	13	13	20	1	8	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0004	1409	13	2	3	1	2	5	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/1	t0005	1425	12	0	2	8	0	1	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0006	1419	12	1	3	6	0	2	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	1/0	t0007	1425	7	0	2	2	0	2	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0008	1417	7	7	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0009	1413	6	0	0	6	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0010	1407	6	2	1	3	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0011	1425	5	5	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0012	1413	4	0	0	4	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0013	1407	4	4	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0014	1423	4	0	0	3	0	1	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0015	1421	4	2	0	1	0	1	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0016	1417	4	4	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0017	1413	3	0	0	1	0	2	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0018	1421	3	0	0	3	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0019	1419	3	1	1	1	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0020	1413	3	3	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0021	1414	3	2	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0022	1429	2	2	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070