JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LHFPL5_chr6_35800352_35829070	0/0	t0023	1419	2	2	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0024	1417	2	0	1	1	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0025	1405	2	0	0	2	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0026	1411	2	0	0	1	0	1	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0027	1409	2	1	0	0	0	1	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0028	1425	2	0	0	2	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0029	1423	2	0	0	2	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0030	1427	2	0	0	1	1	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0031	1427	2	0	2	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0032	1421	2	0	0	2	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0033	1425	2	0	1	0	1	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0034	1417	2	2	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0035	1417	2	1	0	1	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0036	1423	2	2	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0037	1411	2	2	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0038	1429	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0039	1416	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0040	1411	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0041	1425	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0042	1427	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0043	1419	1	0	0	0	1	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0044	1419	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0045	1412	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0046	1417	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0047	1415	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0048	1406	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0049	1413	1	0	0	0	1	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0050	1408	1	0	0	1	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0051	1423	1	0	0	1	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0052	1423	1	0	0	1	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0053	1425	1	0	0	0	0	1	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0054	1421	1	0	0	1	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0055	1417	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0056	1429	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0057	1425	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0058	1425	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0059	1425	1	0	0	1	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0060	1427	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0061	1425	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0062	1421	1	0	0	0	1	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0063	1425	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0064	1421	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0065	1421	1	0	0	0	0	1	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0066	1421	1	0	0	1	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0067	1415	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0068	1423	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0069	1419	1	0	0	0	0	1	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0070	1415	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0071	1423	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0072	1422	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070