JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LHFPL5_chr6_35800352_35829070	0/0	t0073	1423	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0074	1409	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0075	1359	1	0	1	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0076	1407	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0077	1419	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0078	1419	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0079	1415	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0080	1417	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0081	1411	1	0	0	0	1	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0082	1411	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0083	1420	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0084	1425	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0085	1421	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0086	1421	1	0	0	0	1	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0087	1412	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0088	1418	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0089	1416	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL5_chr6_35800352_35829070	0/0	t0090	1412	1	1	0	0	0	0	copy fasta	LHFPL5	chr6	35800352	35829070
LHFPL6_chr13_39337892_39608193	0/0	t0001	1526	42	16	11	13	1	1	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0002	1528	36	8	3	21	1	3	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0003	1532	31	11	7	8	1	4	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0004	1528	25	0	2	20	0	3	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0005	1524	17	4	1	12	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0006	1530	15	6	2	7	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0007	1534	14	5	1	5	1	2	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0008	1524	9	4	2	2	0	1	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0009	1536	9	2	1	4	0	2	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0010	1522	8	6	1	1	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0011	1520	6	6	0	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0012	1528	3	0	0	3	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0013	1530	3	0	1	2	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0014	1524	3	3	0	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0015	1526	2	0	0	2	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0016	1528	2	0	1	0	0	1	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0017	1528	2	2	0	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0018	1530	2	2	0	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0019	1522	1	1	0	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0020	1522	1	1	0	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0021	1526	1	0	0	1	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0022	1526	1	0	0	1	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0023	1528	1	0	0	1	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0024	1514	1	0	1	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0025	1518	1	0	1	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0026	1522	1	0	0	0	0	1	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0027	1530	1	0	1	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0028	1532	1	1	0	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0029	1534	1	0	0	1	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0030	1524	1	1	0	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL6_chr13_39337892_39608193	0/0	t0031	1532	1	1	0	0	0	0	copy fasta	LHFPL6	chr13	39337892	39608193
LHFPL7_chr22_24930098_24951694	1/1	t0001	376	403	82	72	191	12	44	copy fasta	LHFPL7	chr22	24930098	24951694