Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APCDD1L_chr20_58454101_58520399	0/0	t0050	2381	1	0	0	0	0	1	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0051	2381	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0052	2381	1	1	0	0	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1L_chr20_58454101_58520399	0/0	t0053	2381	1	0	0	1	0	0	copy fasta	APCDD1L	chr20	58454101	58520399
APCDD1_chr18_10449635_10494949	0/0	t0001	2259	96	8	20	54	4	10	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0002	2259	73	9	16	34	6	8	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0003	2261	55	1	8	37	2	7	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/1	t0004	2259	53	1	8	28	3	12	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0005	2259	30	5	4	16	0	5	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0006	2256	19	19	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0007	2260	13	12	1	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0008	2261	8	6	2	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0009	2259	7	7	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0010	2258	6	1	0	5	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0011	2259	6	1	4	0	1	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0012	2262	6	4	2	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0013	2262	4	4	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0014	2259	4	0	0	4	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0015	2259	4	0	4	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0016	2259	3	0	1	0	2	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0017	2261	3	3	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0018	2261	2	2	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0019	2258	2	0	0	2	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0020	2259	2	2	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0021	2261	2	2	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0022	2259	2	0	0	2	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0023	2262	2	1	1	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0024	2256	2	1	1	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0025	2259	1	0	0	1	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	1/0	t0026	2259	1	0	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0027	2259	1	0	0	1	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0028	2259	1	0	0	1	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0029	2259	1	0	0	0	0	1	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0030	2262	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0031	2256	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0032	2261	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0033	2258	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0034	2259	1	0	0	1	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0035	2259	1	0	0	1	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0036	2262	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0037	2262	1	0	0	1	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0038	2259	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0039	2259	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0040	2256	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0041	2261	1	1	0	0	0	0	copy fasta	APCDD1	chr18	10449635	10494949
APCDD1_chr18_10449635_10494949	0/0	t0042	2259	1	0	0	0	0	1	copy fasta	APCDD1	chr18	10449635	10494949
APCS_chr1_159582826_159593865	1/1	t0001	254	416	90	78	190	12	44	copy fasta	APCS	chr1	159582826	159593865
APCS_chr1_159582826_159593865	0/0	t0002	254	6	0	0	6	0	0	copy fasta	APCS	chr1	159582826	159593865
APC_chr5_112732885_112851239	0/1	t0001	2174	99	5	24	54	2	13	copy fasta	APC	chr5	112732885	112851239
APC_chr5_112732885_112851239	1/0	t0002	2173	94	28	20	30	3	12	copy fasta	APC	chr5	112732885	112851239