JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LHFPL7_chr22_24930098_24951694	0/0	t0002	376	10	8	2	0	0	0	copy fasta	LHFPL7	chr22	24930098	24951694
LHFPL7_chr22_24930098_24951694	0/0	t0003	376	6	6	0	0	0	0	copy fasta	LHFPL7	chr22	24930098	24951694
LHFPL7_chr22_24930098_24951694	0/0	t0004	376	1	0	0	1	0	0	copy fasta	LHFPL7	chr22	24930098	24951694
LHPP_chr10_124456823_124619141	1/1	t0001	822	209	36	45	79	11	36	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0002	822	14	12	2	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0003	822	12	0	1	7	1	3	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0004	805	10	0	7	0	1	2	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0005	822	2	2	0	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0006	805	1	1	0	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0007	822	1	1	0	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0008	901	1	1	0	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0009	822	1	1	0	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0010	822	1	0	0	1	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0011	822	1	1	0	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0012	822	1	0	0	1	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0013	822	1	0	0	1	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0014	822	1	0	1	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0015	822	1	1	0	0	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0016	822	1	0	0	1	0	0	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0017	839	1	0	0	0	0	1	copy fasta	LHPP	chr10	124456823	124619141
LHPP_chr10_124456823_124619141	0/0	t0018	822	1	0	0	0	1	0	copy fasta	LHPP	chr10	124456823	124619141
LHX1_chr17_36932475_36949612	0/1	t0001	2208	166	11	40	80	5	29	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0002	2204	31	2	7	20	0	2	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0003	2207	21	0	1	17	2	1	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0004	2207	17	2	7	7	0	1	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0005	2209	13	0	1	8	0	4	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0006	2205	13	4	1	2	0	6	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0007	2208	8	0	0	7	0	1	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0008	2209	7	1	1	4	0	1	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0009	2199	7	7	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0010	2208	5	5	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0011	2207	5	0	0	3	2	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0012	2205	5	5	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0013	2210	5	5	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0014	2206	5	0	2	2	1	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0015	2202	4	4	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0016	2201	4	4	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0017	2203	4	4	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0018	2200	4	4	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0019	2208	3	0	0	3	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0020	2204	3	0	1	2	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0021	2203	3	3	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0022	2202	3	2	1	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0023	2203	2	1	1	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0024	2203	2	2	0	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0025	2208	2	0	0	2	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0026	2209	2	0	1	1	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0027	2208	2	1	1	0	0	0	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0028	2202	2	0	0	0	0	2	copy fasta	LHX1	chr17	36932475	36949612
LHX1_chr17_36932475_36949612	0/0	t0029	2206	2	1	0	1	0	0	copy fasta	LHX1	chr17	36932475	36949612